WormBase Tree Display for Gene: WBGene00000461
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| WBGene00000461 | SMap | S_parent | Sequence | F17A2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ceh-40 | Person_evidence | WBPerson83 | |||||
| Sequence_name | F17A2.5 | ||||||||
| Molecular_name | F17A2.5 | ||||||||
| F17A2.5.1 | |||||||||
| CE03215 | |||||||||
| Other_name | CELE_F17A2.5 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | ceh-40 | ||||||||
| DB_info | Database | AceView | gene | XM934 | |||||
| WormQTL | gene | WBGene00000461 | |||||||
| WormFlux | gene | WBGene00000461 | |||||||
| NDB | locus_tag | CELE_F17A2.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000461|UniProtKB=Q19503 | |||||||
| family | PTHR11850 | ||||||||
| NCBI | gene | 191624 | |||||||
| RefSeq | protein | NM_077659.4 | |||||||
| SwissProt | UniProtAcc | Q19503 | |||||||
| TREEFAM | TREEFAM_ID | TF314340 | |||||||
| UniProt_GCRP | UniProtAcc | Q19503 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ceh | ||||||||
| Allele (46) | |||||||||
| Legacy_information | [Burglin,03/98] homeobox gene | ||||||||
| Strain (11) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (19) | |||||||||
| Ortholog | WBGene00058736 | Caenorhabditis remanei | From_analysis | OMA | |||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00027778 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
| OMA | |||||||||
| WormBase-Compara | |||||||||
| WBGene00122670 | Caenorhabditis japonica | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00190637 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| CSP21.g12107 | Caenorhabditis parvicauda | From_analysis | WormBase-Compara | ||||||
| CSP26.g1060 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
| CSP28.g17974 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
| CSP29.g3827 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
| CSP32.g4798 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
| CSP40.g6955 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
| Cnig_chr_X.g25674 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
| Csp5_scaffold_05351.g34838 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
| FL83_01905 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
| GCK72_025423 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
| Sp34_X0153200 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
| chrX_pilon.g20233 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| ZFIN:ZDB-GENE-000405-5 | Danio rerio | From_analysis | OrthoFinder | ||||||
| Panther | |||||||||
| PhylomeDB | |||||||||
| ZFIN:ZDB-GENE-031218-1 | Danio rerio | From_analysis | OrthoFinder | ||||||
| Panther | |||||||||
| PhylomeDB | |||||||||
| MGI:1341793 | Mus musculus | From_analysis | OrthoFinder | ||||||
| Panther | |||||||||
| PhylomeDB | |||||||||
| Paralog | WBGene00000443 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00006796 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00017690 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | ceh-40 encodes one of three C. elegans homeodomain proteins (CEH-20, CEH-40, and CEH-60) homologous to Extradenticle (Exd/Pbx); ceh-40 genetically interacts with ceh-20 and unc-62 during embryonic development: while loss of ceh-40 activity alone results in no significant embryonic lethality, loss of ceh-40 and ceh-20, or ceh-40, ceh-20, and unc-62, results in incompletely penetrant embryonic lethality. | Paper_evidence | WBPaper00005629 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson480 | |||||||||
| Date_last_updated | 27 Jun 2011 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in animal organ development; neuron development; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in dopaminergic neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F17A2.5 | |||||||
| Corresponding_transcript | F17A2.5.1 | ||||||||
| Other_sequence | RSC01549_1 | ||||||||
| RS05971 | |||||||||
| CRC11909_1 | |||||||||
| Associated_feature | WBsf654475 | ||||||||
| WBsf978385 | |||||||||
| WBsf1007276 | |||||||||
| WBsf1024032 | |||||||||
| Transcription_factor | WBTranscriptionFactor000510 | ||||||||
| Experimental_info | RNAi_result (25) | ||||||||
| Expr_pattern (14) | |||||||||
| Drives_construct | WBCnstr00002363 | ||||||||
| WBCnstr00002683 | |||||||||
| WBCnstr00037519 | |||||||||
| WBCnstr00042432 | |||||||||
| WBCnstr00042463 | |||||||||
| Construct_product | WBCnstr00016535 | ||||||||
| WBCnstr00016723 | |||||||||
| WBCnstr00037519 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (147) | |||||||||
| Interaction (286) | |||||||||
| Map_info | Map | X | Position | 7.02147 | Error | 0.003548 | |||
| Positive | Positive_clone | F17A2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| W06D11 | |||||||||
| Mapping_data | Multi_point | 4173 | |||||||
| 4210 | |||||||||
| 4765 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (22) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
