WormBase Tree Display for Gene: WBGene00000461

WBGene00000461 SMap: S_parent: Sequence: F17A2
  Identity: Version: 1
    Name: CGC_name: ceh-40 Person_evidence: WBPerson83
      Sequence_name: F17A2.5
      Molecular_name: F17A2.5
        F17A2.5.1
        CE03215
      Other_name: CELE_F17A2.5 Accession_evidence: NDB BX284606
      Public_name: ceh-40
    DB_info: Database: AceView gene XM934
        WormQTL gene WBGene00000461
        WormFlux gene WBGene00000461
        NDB locus_tag CELE_F17A2.5
        Panther gene CAEEL|WormBase=WBGene00000461|UniProtKB=Q19503
          family PTHR11850
        NCBI gene 191624
        RefSeq protein NM_077659.4
        SwissProt UniProtAcc Q19503
        TREEFAM TREEFAM_ID TF314340
        UniProt_GCRP UniProtAcc Q19503
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:20 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ceh
    Allele (46)
    Legacy_information: [Burglin,03/98] homeobox gene
    Strain (11)
    RNASeq_FPKM (74)
    GO_annotation (19)
    Ortholog (19)
    Paralog: WBGene00000443 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00006796 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00017690 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Concise_description: ceh-40 encodes one of three C. elegans homeodomain proteins (CEH-20, CEH-40, and CEH-60) homologous to Extradenticle (Exd/Pbx); ceh-40 genetically interacts with ceh-20 and unc-62 during embryonic development: while loss of ceh-40 activity alone results in no significant embryonic lethality, loss of ceh-40 and ceh-20, or ceh-40, ceh-20, and unc-62, results in incompletely penetrant embryonic lethality. Paper_evidence: WBPaper00005629
          Curator_confirmed: WBPerson1843
            WBPerson480
          Date_last_updated: 27 Jun 2011 00:00:00
      Automated_description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in animal organ development; neuron development; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in dopaminergic neurons. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F17A2.5
    Corresponding_transcript: F17A2.5.1
    Other_sequence: RSC01549_1
      RS05971
      CRC11909_1
    Associated_feature: WBsf654475
      WBsf978385
      WBsf1007276
      WBsf1024032
    Transcription_factor: WBTranscriptionFactor000510
  Experimental_info: RNAi_result (25)
    Expr_pattern (14)
    Drives_construct: WBCnstr00002363
      WBCnstr00002683
      WBCnstr00037519
      WBCnstr00042432
      WBCnstr00042463
    Construct_product: WBCnstr00016535
      WBCnstr00016723
      WBCnstr00037519
    Microarray_results (19)
    Expression_cluster (147)
    Interaction: WBInteraction000002809
      WBInteraction000002810
      WBInteraction000004626
      WBInteraction000030078
      WBInteraction000030087
      WBInteraction000030088
      WBInteraction000030089
      WBInteraction000046209
      WBInteraction000052319
      WBInteraction000133705
      WBInteraction000133969
      WBInteraction000135500
      WBInteraction000136803
      WBInteraction000140912
      WBInteraction000150181
      WBInteraction000153311
      WBInteraction000156796
      WBInteraction000159538
      WBInteraction000163091
      WBInteraction000164002
      WBInteraction000165550
      WBInteraction000170533
      WBInteraction000176644
      WBInteraction000178483
      WBInteraction000179688
      WBInteraction000182393
      WBInteraction000183384
      WBInteraction000184406
      WBInteraction000186088
      WBInteraction000186891
      WBInteraction000189194
      WBInteraction000189401
      WBInteraction000189733
      WBInteraction000192204
      WBInteraction000192815
      WBInteraction000193163
      WBInteraction000194313
      WBInteraction000195908
      WBInteraction000197149
      WBInteraction000203220
      WBInteraction000204221
      WBInteraction000204952
      WBInteraction000205400
      WBInteraction000205733
      WBInteraction000207988
      WBInteraction000212224
      WBInteraction000213965
      WBInteraction000214180
      WBInteraction000214659
      WBInteraction000214758
      WBInteraction000216075
      WBInteraction000216239
      WBInteraction000216930
      WBInteraction000217637
      WBInteraction000218333
      WBInteraction000218405
      WBInteraction000218569
      WBInteraction000219351
      WBInteraction000219364
      WBInteraction000219582
      WBInteraction000220681
      WBInteraction000222632
      WBInteraction000223336
      WBInteraction000223778
      WBInteraction000224650
      WBInteraction000225227
      WBInteraction000226866
      WBInteraction000226966
      WBInteraction000227231
      WBInteraction000227279
      WBInteraction000227479
      WBInteraction000229096
      WBInteraction000229782
      WBInteraction000233795
      WBInteraction000233980
      WBInteraction000234690
      WBInteraction000234829
      WBInteraction000235966
      WBInteraction000236552
      WBInteraction000239796
      WBInteraction000239947
      WBInteraction000240668
      WBInteraction000241758
      WBInteraction000242417
      WBInteraction000242832
      WBInteraction000244810
      WBInteraction000246756
      WBInteraction000247867
      WBInteraction000248376
      WBInteraction000249242
      WBInteraction000249456
      WBInteraction000251248
      WBInteraction000253826
      WBInteraction000254030
      WBInteraction000254313
      WBInteraction000254365
      WBInteraction000254515
      WBInteraction000256103
      WBInteraction000257277
      WBInteraction000258993
      WBInteraction000259331
      WBInteraction000259529
      WBInteraction000260187
      WBInteraction000261280
      WBInteraction000265209
      WBInteraction000265415
      WBInteraction000265721
      WBInteraction000268854
      WBInteraction000268944
      WBInteraction000271017
      WBInteraction000271626
      WBInteraction000272007
      WBInteraction000273618
      WBInteraction000274623
      WBInteraction000276714
      WBInteraction000276927
      WBInteraction000277542
      WBInteraction000277573
      WBInteraction000278721
      WBInteraction000279295
      WBInteraction000279592
      WBInteraction000279687
      WBInteraction000281562
      WBInteraction000283610
      WBInteraction000289965
      WBInteraction000290512
      WBInteraction000291353
      WBInteraction000291790
      WBInteraction000292467
      WBInteraction000293258
      WBInteraction000293392
      WBInteraction000296991
      WBInteraction000298127
      WBInteraction000298165
      WBInteraction000300464
      WBInteraction000301694
      WBInteraction000302039
      WBInteraction000306446
      WBInteraction000307078
      WBInteraction000307458
      WBInteraction000307484
      WBInteraction000310911
      WBInteraction000312565
      WBInteraction000313635
      WBInteraction000316907
      WBInteraction000316966
      WBInteraction000318304
      WBInteraction000320868
      WBInteraction000321591
      WBInteraction000324052
      WBInteraction000324584
      WBInteraction000324904
      WBInteraction000326848
      WBInteraction000326997
      WBInteraction000328406
      WBInteraction000329350
      WBInteraction000331034
      WBInteraction000338588
      WBInteraction000338744
      WBInteraction000341783
      WBInteraction000341796
      WBInteraction000342582
      WBInteraction000343037
      WBInteraction000345542
      WBInteraction000346631
      WBInteraction000347427
      WBInteraction000348150
      WBInteraction000351977
      WBInteraction000353912
      WBInteraction000357344
      WBInteraction000358986
      WBInteraction000360617
      WBInteraction000364298
      WBInteraction000366834
      WBInteraction000367303
      WBInteraction000369410
      WBInteraction000371915
      WBInteraction000372815
      WBInteraction000373910
      WBInteraction000380950
      WBInteraction000381487
      WBInteraction000381545
      WBInteraction000381635
      WBInteraction000382191
      WBInteraction000382497
      WBInteraction000382859
      WBInteraction000383232
      WBInteraction000389745
      WBInteraction000392733
      WBInteraction000394368
      WBInteraction000395921
      WBInteraction000396432
      WBInteraction000399958
      WBInteraction000401539
      WBInteraction000401783
      WBInteraction000405376
      WBInteraction000406184
      WBInteraction000406731
      WBInteraction000406972
      WBInteraction000408819
      WBInteraction000411921
      WBInteraction000412012
      WBInteraction000412826
      WBInteraction000413003
      WBInteraction000413277
      WBInteraction000415072
      WBInteraction000417535
      WBInteraction000418334
      WBInteraction000418351
      WBInteraction000422176
      WBInteraction000422921
      WBInteraction000424279
      WBInteraction000425927
      WBInteraction000427333
      WBInteraction000430703
      WBInteraction000430984
      WBInteraction000433356
      WBInteraction000437444
      WBInteraction000442087
      WBInteraction000442689
      WBInteraction000442865
      WBInteraction000444024
      WBInteraction000445802
      WBInteraction000446487
      WBInteraction000448816
      WBInteraction000448856
      WBInteraction000455934
      WBInteraction000456166
      WBInteraction000458345
      WBInteraction000462002
      WBInteraction000501054
      WBInteraction000501056
      WBInteraction000505838
      WBInteraction000505839
      WBInteraction000505840
      WBInteraction000505841
      WBInteraction000505842
      WBInteraction000505843
      WBInteraction000505844
      WBInteraction000505845
      WBInteraction000505846
      WBInteraction000505847
      WBInteraction000505848
      WBInteraction000505849
      WBInteraction000505850
      WBInteraction000505851
      WBInteraction000505852
      WBInteraction000505853
      WBInteraction000505854
      WBInteraction000505855
      WBInteraction000505856
      WBInteraction000505857
      WBInteraction000505858
      WBInteraction000505859
      WBInteraction000505860
      WBInteraction000505861
      WBInteraction000505862
      WBInteraction000505863
      WBInteraction000505864
      WBInteraction000505865
      WBInteraction000505866
      WBInteraction000505867
      WBInteraction000505868
      WBInteraction000505869
      WBInteraction000505870
      WBInteraction000511601
      WBInteraction000511602
      WBInteraction000511603
      WBInteraction000511605
      WBInteraction000511606
      WBInteraction000516003
      WBInteraction000516004
      WBInteraction000516005
      WBInteraction000516006
      WBInteraction000520897
      WBInteraction000520936
      WBInteraction000521533
      WBInteraction000525609
      WBInteraction000526285
      WBInteraction000527400
      WBInteraction000527929
      WBInteraction000535212
      WBInteraction000540101
      WBInteraction000547826
      WBInteraction000548976
      WBInteraction000585253
  Map_info: Map: X Position: 7.02147 Error: 0.003548
    Positive: Positive_clone: F17A2 Inferred_automatically: From sequence, transcript, pseudogene data
        W06D11
    Mapping_data: Multi_point: 4173
        4210
        4765
    Pseudo_map_position
  Reference (22)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene