WormBase Tree Display for Gene: WBGene00000288
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WBGene00000288 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | cal-4 | Person_evidence | WBPerson261 | |||||
Sequence_name | T07G12.1 | ||||||||
Molecular_name | T07G12.1a | ||||||||
T07G12.1a.1 | |||||||||
CE43875 | |||||||||
T07G12.1b | |||||||||
CE43912 | |||||||||
T07G12.1c | |||||||||
CE13387 | |||||||||
T07G12.1b.1 | |||||||||
T07G12.1b.2 | |||||||||
T07G12.1c.1 | |||||||||
Other_name | CELE_T07G12.1 | Accession_evidence | NDB | BX284604 | |||||
Public_name | cal-4 | ||||||||
DB_info | Database | AceView | gene | 4L293 | |||||
WormQTL | gene | WBGene00000288 | |||||||
WormFlux | gene | WBGene00000288 | |||||||
NDB | locus_tag | CELE_T07G12.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00000288|UniProtKB=G5EDZ8 | |||||||
family | PTHR23050 | ||||||||
NCBI | gene | 177945 | |||||||
RefSeq | protein | NM_001392392.1 | |||||||
NM_001392393.1 | |||||||||
NM_001268562.3 | |||||||||
TREEFAM | TREEFAM_ID | TF354258 | |||||||
TrEMBL | UniProtAcc | G5EF93 | |||||||
G5EDZ8 | |||||||||
O18058 | |||||||||
UniProt_GCRP | UniProtAcc | G5EDZ8 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | cal | ||||||||
Allele (139) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00015097 | ||||||||
00107176 | |||||||||
Ortholog (31) | |||||||||
Paralog (18) | |||||||||
Structured_description | Concise_description | cal-4 encodes one of five predicted C. elegans calcium-binding calmodulin homologs (the others being CAL-1, CAL-2, CAL-3 and CMD-1); as loss of cal-4 function via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of CAL-4 in C. elegans development and/or behavior is not yet known. | Paper_evidence | WBPaper00005654 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 18 Oct 2006 00:00:00 | ||||||||
Automated_description | Predicted to enable calcium ion binding activity. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T07G12.1a | |||||||
T07G12.1b | |||||||||
T07G12.1c | |||||||||
Corresponding_transcript | T07G12.1a.1 | ||||||||
T07G12.1b.1 | |||||||||
T07G12.1b.2 | |||||||||
T07G12.1c.1 | |||||||||
Other_sequence | CR04779 | ||||||||
CRC05558_1 | |||||||||
Acan_isotig16535 | |||||||||
GRC00610_1 | |||||||||
Dviv_isotig15698 | |||||||||
JI464431.1 | |||||||||
ES567728.1 | |||||||||
FG583640.1 | |||||||||
ES566334.1 | |||||||||
JI467444.1 | |||||||||
TSC00258_1 | |||||||||
ES272840.1 | |||||||||
JI468664.1 | |||||||||
SC01272 | |||||||||
ES562464.1 | |||||||||
ES562531.1 | |||||||||
ACC27235_1 | |||||||||
JI172765.1 | |||||||||
EY463421.1 | |||||||||
CR05296 | |||||||||
MAC02095_1 | |||||||||
TS01488 | |||||||||
AW506490.1 | |||||||||
ES564427.1 | |||||||||
MA01125 | |||||||||
GR977935.1 | |||||||||
Dviv_isotig15699 | |||||||||
JI465056.1 | |||||||||
Associated_feature | WBsf660585 | ||||||||
WBsf660586 | |||||||||
WBsf997639 | |||||||||
WBsf997640 | |||||||||
WBsf997641 | |||||||||
WBsf997642 | |||||||||
WBsf1018106 | |||||||||
WBsf1018107 | |||||||||
WBsf228999 | |||||||||
Experimental_info | RNAi_result | WBRNAi00052782 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00035317 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00076661 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00018388 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr6632 | ||||||||
Expr1011751 | |||||||||
Expr1156389 | |||||||||
Expr2009704 | |||||||||
Expr2027943 | |||||||||
Drives_construct | WBCnstr00004019 | ||||||||
WBCnstr00037602 | |||||||||
Construct_product | WBCnstr00037602 | ||||||||
Microarray_results (22) | |||||||||
Expression_cluster (187) | |||||||||
Interaction (11) | |||||||||
Map_info | Map | IV | Position | 4.61636 | Error | 0.000867 | |||
Positive | Positive_clone | T07G12 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00019540 | ||||||||
WBPaper00023932 | |||||||||
WBPaper00030971 | |||||||||
WBPaper00050050 | |||||||||
Remark (2) | |||||||||
Method | Gene |