WormBase Tree Display for Gene: WBGene00000288
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| WBGene00000288 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | cal-4 | Person_evidence | WBPerson261 | |||||
| Sequence_name | T07G12.1 | ||||||||
| Molecular_name | T07G12.1a | ||||||||
| T07G12.1a.1 | |||||||||
| CE43875 | |||||||||
| T07G12.1b | |||||||||
| CE43912 | |||||||||
| T07G12.1c | |||||||||
| CE13387 | |||||||||
| T07G12.1b.1 | |||||||||
| T07G12.1b.2 | |||||||||
| T07G12.1c.1 | |||||||||
| Other_name | CELE_T07G12.1 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | cal-4 | ||||||||
| DB_info | Database | AceView | gene | 4L293 | |||||
| WormQTL | gene | WBGene00000288 | |||||||
| WormFlux | gene | WBGene00000288 | |||||||
| NDB | locus_tag | CELE_T07G12.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000288|UniProtKB=G5EDZ8 | |||||||
| family | PTHR23050 | ||||||||
| NCBI | gene | 177945 | |||||||
| RefSeq | protein | NM_001392392.1 | |||||||
| NM_001392393.1 | |||||||||
| NM_001268562.3 | |||||||||
| TREEFAM | TREEFAM_ID | TF354258 | |||||||
| TrEMBL | UniProtAcc | G5EF93 | |||||||
| G5EDZ8 | |||||||||
| O18058 | |||||||||
| UniProt_GCRP | UniProtAcc | G5EDZ8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cal | ||||||||
| Allele (139) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00015097 | ||||||||
| 00107176 | |||||||||
| Ortholog (31) | |||||||||
| Paralog (18) | |||||||||
| Structured_description | Concise_description | cal-4 encodes one of five predicted C. elegans calcium-binding calmodulin homologs (the others being CAL-1, CAL-2, CAL-3 and CMD-1); as loss of cal-4 function via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of CAL-4 in C. elegans development and/or behavior is not yet known. | Paper_evidence | WBPaper00005654 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 18 Oct 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable calcium ion binding activity. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T07G12.1a | |||||||
| T07G12.1b | |||||||||
| T07G12.1c | |||||||||
| Corresponding_transcript | T07G12.1a.1 | ||||||||
| T07G12.1b.1 | |||||||||
| T07G12.1b.2 | |||||||||
| T07G12.1c.1 | |||||||||
| Other_sequence (28) | |||||||||
| Associated_feature | WBsf660585 | ||||||||
| WBsf660586 | |||||||||
| WBsf997639 | |||||||||
| WBsf997640 | |||||||||
| WBsf997641 | |||||||||
| WBsf997642 | |||||||||
| WBsf1018106 | |||||||||
| WBsf1018107 | |||||||||
| WBsf228999 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00052782 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00035317 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076661 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00018388 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr6632 | ||||||||
| Expr1011751 | |||||||||
| Expr1156389 | |||||||||
| Expr2009704 | |||||||||
| Expr2027943 | |||||||||
| Drives_construct | WBCnstr00004019 | ||||||||
| WBCnstr00037602 | |||||||||
| Construct_product | WBCnstr00037602 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (187) | |||||||||
| Interaction (11) | |||||||||
| Map_info | Map | IV | Position | 4.61636 | Error | 0.000867 | |||
| Positive | Positive_clone | T07G12 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00019540 | ||||||||
| WBPaper00023932 | |||||||||
| WBPaper00030971 | |||||||||
| WBPaper00050050 | |||||||||
| Remark | Sequence connection from [Schulze E, Karabinos A, Weber K], 02/06/11 krb | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
