WormBase Tree Display for Gene: WBGene00000251
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| WBGene00000251 | SMap | S_parent | Sequence | C09G5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | bli-1 | Person_evidence | WBPerson261 | |||||
| Sequence_name | C09G5.6 | ||||||||
| Molecular_name | C09G5.6 | ||||||||
| C09G5.6.1 | |||||||||
| CE35827 | |||||||||
| Other_name | CELE_C09G5.6 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | bli-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | bli | ||||||||
| Reference_allele | WBVar00143471 | ||||||||
| Allele (62) | |||||||||
| Legacy_information | e769 : adult blistered especially head. ES3 (old adult) ME2. NA7 (e770 e935 (weaker allele) e993spo etc.). Spontaneous mutations frequent. | ||||||||
| See also e769, e770, e771 | |||||||||
| [C.elegansII] e769 : adult symmetrically blistered,especially head; enhanced 25C. ES3 (old adult) ME2. OA6: e770, e935 (weaker allele) e993spo, e1610 etc. Spontaneous mutations frequent. [Brenner 1974; CB] | |||||||||
| Strain | WBStrain00027610 | ||||||||
| WBStrain00000064 | |||||||||
| WBStrain00004369 | |||||||||
| WBStrain00004522 | |||||||||
| WBStrain00004206 | |||||||||
| WBStrain00052605 | |||||||||
| WBStrain00054764 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (20) | |||||||||
| Paralog (162) | |||||||||
| Structured_description | Concise_description | The bli-1 gene encodes an unusual cuticular collagen that is required for proper strut formation within the unique medial layer of the adult cuticle; bli-1 interacts genetically with other cuticular collagens such as bli-2 and rol-1, and may be processed for secretion by BLI-4, a Kex2/subtilisin serine endoproteinase; consistent with its role in adult cuticle formation, bli-1 mRNA is highly expressed only during the L4 larval stage. | Paper_evidence | WBPaper00003853 | |||||
| WBPaper00015511 | |||||||||
| WBPaper00016094 | |||||||||
| WBPaper00023060 | |||||||||
| WBPaper00023712 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to be a structural constituent of collagen and cuticulin-based cuticle. Involved in cuticle development involved in collagen and cuticulin-based cuticle molting cycle. Located in medial layer of collagen and cuticulin-based cuticle extracellular matrix. Expressed in hyp7 syncytium and seam cell. Human ortholog(s) of this gene implicated in Stickler syndrome and multiple epiphyseal dysplasia 6. Is an ortholog of human COL27A1 (collagen type XXVII alpha 1 chain) and COL9A1 (collagen type IX alpha 1 chain). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0070301 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2217) | ||||
| DOID:2256 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2217) | ||||||
| DOID:0080046 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2217) | ||||||
| Molecular_info | Corresponding_CDS | C09G5.6 | |||||||
| Corresponding_CDS_history | C09G5.6:wp111 | ||||||||
| Corresponding_transcript | C09G5.6.1 | ||||||||
| Other_sequence (17) | |||||||||
| Associated_feature | WBsf222054 | ||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Expr11722 | ||||||||
| Expr11728 | |||||||||
| Expr1018238 | |||||||||
| Expr1030161 | |||||||||
| Expr1144310 | |||||||||
| Expr2027866 | |||||||||
| Drives_construct | WBCnstr00006846 | ||||||||
| WBCnstr00019335 | |||||||||
| WBCnstr00037628 | |||||||||
| Construct_product | WBCnstr00006846 | ||||||||
| WBCnstr00037628 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (218) | |||||||||
| Interaction (34) | |||||||||
| WBProcess | WBbiopr:00000124 | ||||||||
| Map_info | Map | II | Position | 3.12416 | Error | 5.7e-05 | |||
| Well_ordered | |||||||||
| Positive | Inside_rearr | mnDf57 | |||||||
| Positive_clone | C09G5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Mapping_data | 2_point | 46 | |||||||
| 48 | |||||||||
| Multi_point | 53 | ||||||||
| 2017 | |||||||||
| 3519 | |||||||||
| 3852 | |||||||||
| 3858 | |||||||||
| 3923 | |||||||||
| 4610 | |||||||||
| 4773 | |||||||||
| 5699 | |||||||||
| Pos_neg_data | 1219 | ||||||||
| 1222 | |||||||||
| 1248 | |||||||||
| 1289 | |||||||||
| 1344 | |||||||||
| 1405 | |||||||||
| 1421 | |||||||||
| Landmark_gene | |||||||||
| Reference (56) | |||||||||
| Method | Gene |
