WormBase Tree Display for Gene: WBGene00000248
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| WBGene00000248 | SMap | S_parent | Sequence | C54C6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ben-1 | Person_evidence | WBPerson95 | |||||
| Sequence_name | C54C6.2 | ||||||||
| Molecular_name | C54C6.2 | ||||||||
| C54C6.2.1 | |||||||||
| CE33770 | |||||||||
| Other_name | tbb-5 | ||||||||
| CELE_C54C6.2 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | ben-1 | ||||||||
| DB_info | Database | AceView | gene | 3E628 | |||||
| WormQTL | gene | WBGene00000248 | |||||||
| WormFlux | gene | WBGene00000248 | |||||||
| NDB | locus_tag | CELE_C54C6.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000248|UniProtKB=Q18817 | |||||||
| family | PTHR11588 | ||||||||
| NCBI | gene | 175461 | |||||||
| RefSeq | protein | NM_065327.4 | |||||||
| TrEMBL | UniProtAcc | Q18817 | |||||||
| UniProt_GCRP | UniProtAcc | Q18817 | |||||||
| OMIM | gene | 191130 | |||||||
| 602662 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ben | ||||||||
| Reference_allele | WBVar00144378 | ||||||||
| Allele (100) | |||||||||
| Legacy_information | e1880ts sd : resistant to 14fM benomyl no other phenotype. ES1. NA>20 (e1910 u102 etc. : all somewhat ts and sd). | ||||||||
| See also e1880, e1910, e1911 | |||||||||
| [C.elegansII] e1880ts,sd : resistant to 14fM benomyl no other phenotype. ES1. OA>20: e1910, u102, u134 etc. (all somewhat ts and sd). Cloned: encodes beta-tubulin. [Driscoll et al. 1989] | |||||||||
| Strain | WBStrain00004488 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (21) | |||||||||
| Contained_in_operon | CEOP3820 | ||||||||
| Ortholog (48) | |||||||||
| Paralog (16) | |||||||||
| Structured_description | Automated_description | Predicted to enable GTP binding activity and structural molecule activity. Predicted to be a structural constituent of cytoskeleton. Involved in chemosensory behavior and egg-laying behavior. Predicted to be located in cytoplasm and microtubule. Expressed in coelomocyte; epithelial cell; muscle cell; and nervous system. Human ortholog(s) of this gene implicated in brain disease (multiple) and congenital symmetric circumferential skin creases 1. Is an ortholog of human TUBB (tubulin beta class I) and TUBB4A (tubulin beta 4A class IVa). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0112242 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20778) | ||||
| DOID:0090136 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20778) | ||||||
| DOID:0060798 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20774) | ||||||
| DOID:0090041 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20774) | ||||||
| Molecular_info | Corresponding_CDS | C54C6.2 | |||||||
| Corresponding_CDS_history | C54C6.2:wp99 | ||||||||
| Corresponding_transcript | C54C6.2.1 | ||||||||
| Other_sequence (318) | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result (19) | ||||||||
| Expr_pattern | Expr15255 | ||||||||
| Expr1024052 | |||||||||
| Expr1030158 | |||||||||
| Expr1147080 | |||||||||
| Expr2009592 | |||||||||
| Expr2027829 | |||||||||
| Drives_construct | WBCnstr00022651 | ||||||||
| WBCnstr00037631 | |||||||||
| Construct_product | WBCnstr00008936 | ||||||||
| WBCnstr00008937 | |||||||||
| WBCnstr00020073 | |||||||||
| WBCnstr00021850 | |||||||||
| WBCnstr00022651 | |||||||||
| WBCnstr00037631 | |||||||||
| WBCnstr00042131 | |||||||||
| WBCnstr00042132 | |||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (205) | |||||||||
| Interaction (192) | |||||||||
| Anatomy_function | WBbtf0571 | ||||||||
| Map_info | Map | III | Position | -5.83203 | Error | 0.102815 | |||
| Well_ordered | |||||||||
| Positive | Positive_clone | C54C6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| ZK1287 | |||||||||
| Mapping_data | Multi_point | 858 | |||||||
| 859 | |||||||||
| 860 | |||||||||
| 861 | |||||||||
| 4362 | |||||||||
| 4519 | |||||||||
| Pos_neg_data | 4709 | ||||||||
| 4721 | |||||||||
| Reference (50) | |||||||||
| Method | Gene |
