WormBase Tree Display for Gene: WBGene00000216
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WBGene00000216 | Evidence | CGC_data_submission | |||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | H22K11 | ||||||
Identity | Version | 1 | |||||||
Name | CGC_name | asp-3 | Person_evidence | WBPerson184 | |||||
Sequence_name | H22K11.1 | ||||||||
Molecular_name | H22K11.1 | ||||||||
H22K11.1.1 | |||||||||
CE47856 | |||||||||
Other_name | CELE_H22K11.1 | Accession_evidence | NDB | BX284606 | |||||
Public_name | asp-3 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | asp | ||||||||
Allele (35) | |||||||||
Strain | WBStrain00051696 | ||||||||
WBStrain00055639 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (20) | |||||||||
Ortholog (36) | |||||||||
Paralog (17) | |||||||||
Structured_description | Concise_description | asp-3 encodes an aspartyl protease homolog that is required, in parallel with ASP-4 but downstream of CLP-1 and TRA-3, for degenerative (necrotic-like) cell death in neurons induced by mutations such as mec-4(d), deg-3(d), or gsa-1(gf). | Paper_evidence | WBPaper00005513 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable aspartic-type endopeptidase activity. Involved in programmed necrotic cell death. Located in lysosome. Expressed in intestine and uterus. Is an ortholog of human NAPSA (napsin A aspartic peptidase). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | H22K11.1 | |||||||
Corresponding_transcript | H22K11.1.1 | ||||||||
Other_sequence (229) | |||||||||
Associated_feature | WBsf662316 | ||||||||
WBsf662911 | |||||||||
WBsf982190 | |||||||||
WBsf1005643 | |||||||||
WBsf1005644 | |||||||||
WBsf1023141 | |||||||||
WBsf235869 | |||||||||
WBsf235870 | |||||||||
WBsf235871 | |||||||||
Experimental_info | RNAi_result (20) | ||||||||
Expr_pattern (6) | |||||||||
Drives_construct | WBCnstr00037656 | ||||||||
Construct_product | WBCnstr00037656 | ||||||||
Antibody | WBAntibody00002873 | ||||||||
Microarray_results (25) | |||||||||
Expression_cluster (245) | |||||||||
Interaction (131) | |||||||||
Map_info | Map | X | Position | -2.42178 | Error | 0.004086 | |||
Positive | Positive_clone | H22K11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (29) | |||||||||
Remark | Sequence connection from [Freedman J] | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |