WormBase Tree Display for Gene: WBGene00000216

WBGene00000216 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: H22K11
  Identity: Version: 1
    Name: CGC_name: asp-3 Person_evidence: WBPerson184
      Sequence_name: H22K11.1
      Molecular_name: H22K11.1
        H22K11.1.1
        CE47856
      Other_name: CELE_H22K11.1 Accession_evidence: NDB BX284606
      Public_name: asp-3
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:20 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: asp
    Allele (35)
    Strain: WBStrain00051696
      WBStrain00055639
    RNASeq_FPKM (74)
    GO_annotation (20)
    Ortholog (36)
    Paralog (17)
    Structured_description: Concise_description: asp-3 encodes an aspartyl protease homolog that is required, in parallel with ASP-4 but downstream of CLP-1 and TRA-3, for degenerative (necrotic-like) cell death in neurons induced by mutations such as mec-4(d), deg-3(d), or gsa-1(gf). Paper_evidence: WBPaper00005513
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable aspartic-type endopeptidase activity. Involved in programmed necrotic cell death. Located in lysosome. Expressed in intestine and uterus. Is an ortholog of human NAPSA (napsin A aspartic peptidase). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: H22K11.1
    Corresponding_transcript: H22K11.1.1
    Other_sequence: EX012714.1
      CSC00828_1
      FC813928.1
      AM743640.1
      PT01105
      EG025567.1
      TDC02796_1
      EX007813.1
      PSC00011_2
      ES411440.1
      EX009021.1
      FD517315.1
      HBC00509_1
      FD517724.1
      FD515865.1
      JI181411.1
      CBC00140_1
      HC03450
      GW406772.1
      AS00866
      FC814497.1
      HC02514
      FG975323.1
      FG975554.1
      JI466774.1
      HBC04899_1
      FC814775.1
      ASC04574_1
      PSC01880_1
      FD516871.1
      FF679582.1
      ES412717.1
      EW743000.1
      HCC00236_1
      Tcir_isotig06466
      HC01897
      EX916392.1
      FG978678.1
      AS09335
      HBC00123_1
      AJ309528.1
      GW411591.1
      CBC12527_1
      OFC00673_1
      EX911257.1
      HC01353
      HC09050
      OF00263
      FG971314.1
      ES742536.1
      AS09264
      FG979167.1
      MC02160
      ES743828.1
      ES413932.1
      EX012195.1
      CR02665
      Tcir_isotig17486
      CJC09376_1
      PP00373
      CJC08439_1
      PSC00011_1
      FD517089.1
      FF680048.1
      EX011994.1
      HBC23316_1
      FG973855.1
      Acan_isotig11984
      FD515390.1
      FD515699.1
      AS06389
      ES568680.1
      SRC00318_1
      FG974634.1
      FD515050.1
      MCC02595_1
      HC00326
      FC818745.1
      ES744635.1
      Tcir_isotig25016
      HCC01789_1
      PTC00425_1
      ES742563.1
      FG978837.1
      FF679581.1
      BXC05775_1
      CJC17545_1
      FG971191.1
      Tcir_isotig02739
      Tcir_isotig22514
      FD516292.1
      HC04939
      GW412312.1
      EX010088.1
      FF680251.1
      PPC11586_1
      TS00566
      ES411254.1
      FD517326.1
      HCC09631_1
      FC813029.1
      FD514127.1
      ES739413.1
      FF680373.1
      GW412322.1
      SR00486
      Tcir_isotig31444
      FG973693.1
      ES739568.1
      EX914491.1
      SR00889
      EX007837.1
      Tcir_isotig06178
      FF680005.1
      FD516307.1
      HCC06670_1
      HC05205
      FC817299.1
      ES411019.1
      ES739152.1
      AS00709
      GO252768.1
      HCC11559_1
      OF00262
      ES409965.1
      FC811726.1
      ES740576.1
      FG974641.1
      EX911684.1
      ES412191.1
      HCC11345_1
      Hbac_isotig00037
      FG978176.1
      ES412419.1
      CJC08040_1
      FC814992.1
      HCC13223_1
      EX011491.1
      FG978937.1
      CRC08729_1
      FG974291.1
      CJC00770_1
      EW744180.1
      GW408756.1
      HC04550
      DA00217
      ES741664.1
      EX015246.1
      ES570295.1
      HC00547
      GW412292.1
      FD516878.1
      HBC16052_1
      HC04305
      FD515722.1
      HC01569
      FF681041.1
      HBC13363_1
      HC01666
      CRC01071_1
      FG981160.1
      EX916202.1
      HC09406
      FF681573.1
      XIC02523_1
      Tcir_isotig02738
      EX009837.1
      FD517454.1
      FC809673.1
      EL784470.1
      EX010831.1
      AJ309529.1
      DW718324.1
      AS00943
      HCC02518_1
      FG980830.1
      Tcol_isotig16581
      FC819328.1
      HBC03240_1
      Tcir_isotig26559
      AJ299415.1
      TS03361
      ES739108.1
      FF681336.1
      Tcir_isotig18588
      FJ756442.1
      ES743793.1
      ES410832.1
      ES743493.1
      FF679345.1
      EX008528.1
      EX913524.1
      HC02512
      FC817138.1
      FD514371.1
      ACC19289_1
      FG971908.1
      FG586960.1
      FC819873.1
      HCC11233_1
      PSC00011_3
      HC01204
      ES743988.1
      SRC00318_2
      ES410558.1
      ES408832.1
      FF681228.1
      HCC10750_1
      FC814834.1
      XI03120
      Tcir_isotig09258
      ES408608.1
      FD516659.1
      PPC00081_1
      Tcir_isotig27126
      Tcir_isotig06883
      FD515377.1
      Tcir_isotig05383
      EX009173.1
      ACC17075_1
      FG979243.1
      FF680476.1
      Oden_isotig24948
      CSC00182_1
      HCC12608_1
      CBC15618_1
      FC809536.1
      FF680271.1
      EX011172.1
    Associated_feature: WBsf662316
      WBsf662911
      WBsf982190
      WBsf1005643
      WBsf1005644
      WBsf1023141
      WBsf235869
      WBsf235870
      WBsf235871
  Experimental_info: RNAi_result (20)
    Expr_pattern: Expr2132
      Expr1020339
      Expr1030133
      Expr1153183
      Expr2009467
      Expr2027705
    Drives_construct: WBCnstr00037656
    Construct_product: WBCnstr00037656
    Antibody: WBAntibody00002873
    Microarray_results (25)
    Expression_cluster (245)
    Interaction (131)
  Map_info: Map: X Position: -2.42178 Error: 0.004086
    Positive: Positive_clone: H22K11 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (29)
  Remark: Sequence connection from [Freedman J]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene