WormBase Tree Display for Gene: WBGene00000216

WBGene00000216 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: H22K11
  Identity: Version: 1
    Name: CGC_name: asp-3 Person_evidence: WBPerson184
      Sequence_name: H22K11.1
      Molecular_name: H22K11.1
        H22K11.1.1
        CE47856
      Other_name: CELE_H22K11.1 Accession_evidence: NDB BX284606
      Public_name: asp-3
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:20 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: asp
    Allele (35)
    Strain: WBStrain00051696
      WBStrain00055639
    RNASeq_FPKM (74)
    GO_annotation (20)
    Ortholog (36)
    Paralog (17)
    Structured_description: Concise_description: asp-3 encodes an aspartyl protease homolog that is required, in parallel with ASP-4 but downstream of CLP-1 and TRA-3, for degenerative (necrotic-like) cell death in neurons induced by mutations such as mec-4(d), deg-3(d), or gsa-1(gf). Paper_evidence: WBPaper00005513
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable aspartic-type endopeptidase activity. Involved in programmed necrotic cell death. Located in lysosome. Expressed in intestine and uterus. Is an ortholog of human NAPSA (napsin A aspartic peptidase). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: H22K11.1
    Corresponding_transcript: H22K11.1.1
    Other_sequence (229)
    Associated_feature: WBsf662316
      WBsf662911
      WBsf982190
      WBsf1005643
      WBsf1005644
      WBsf1023141
      WBsf235869
      WBsf235870
      WBsf235871
  Experimental_info: RNAi_result (20)
    Expr_pattern: Expr2132
      Expr1020339
      Expr1030133
      Expr1153183
      Expr2009467
      Expr2027705
    Drives_construct: WBCnstr00037656
    Construct_product: WBCnstr00037656
    Antibody: WBAntibody00002873
    Microarray_results (25)
    Expression_cluster (245)
    Interaction: WBInteraction000029757
      WBInteraction000103219
      WBInteraction000104706
      WBInteraction000108850
      WBInteraction000116235
      WBInteraction000119663
      WBInteraction000127548
      WBInteraction000135495
      WBInteraction000135508
      WBInteraction000140825
      WBInteraction000140826
      WBInteraction000149155
      WBInteraction000150429
      WBInteraction000151647
      WBInteraction000163791
      WBInteraction000170294
      WBInteraction000172120
      WBInteraction000175662
      WBInteraction000175674
      WBInteraction000176566
      WBInteraction000187550
      WBInteraction000188510
      WBInteraction000190421
      WBInteraction000194445
      WBInteraction000200080
      WBInteraction000201091
      WBInteraction000203031
      WBInteraction000206212
      WBInteraction000212033
      WBInteraction000212400
      WBInteraction000212838
      WBInteraction000213431
      WBInteraction000217862
      WBInteraction000218578
      WBInteraction000229275
      WBInteraction000230237
      WBInteraction000230419
      WBInteraction000235558
      WBInteraction000237237
      WBInteraction000247250
      WBInteraction000251784
      WBInteraction000255365
      WBInteraction000261055
      WBInteraction000266516
      WBInteraction000266920
      WBInteraction000268162
      WBInteraction000270129
      WBInteraction000273832
      WBInteraction000275996
      WBInteraction000277032
      WBInteraction000290857
      WBInteraction000292271
      WBInteraction000292501
      WBInteraction000293272
      WBInteraction000295595
      WBInteraction000296750
      WBInteraction000298406
      WBInteraction000299860
      WBInteraction000303529
      WBInteraction000304202
      WBInteraction000304910
      WBInteraction000308354
      WBInteraction000310591
      WBInteraction000312207
      WBInteraction000312983
      WBInteraction000316220
      WBInteraction000319791
      WBInteraction000321831
      WBInteraction000324220
      WBInteraction000335249
      WBInteraction000337228
      WBInteraction000342701
      WBInteraction000348796
      WBInteraction000350508
      WBInteraction000351059
      WBInteraction000352797
      WBInteraction000364911
      WBInteraction000368903
      WBInteraction000369523
      WBInteraction000375765
      WBInteraction000375984
      WBInteraction000379230
      WBInteraction000380398
      WBInteraction000380905
      WBInteraction000384127
      WBInteraction000386804
      WBInteraction000393482
      WBInteraction000394404
      WBInteraction000402500
      WBInteraction000404968
      WBInteraction000405781
      WBInteraction000406220
      WBInteraction000409380
      WBInteraction000412975
      WBInteraction000416168
      WBInteraction000416826
      WBInteraction000418625
      WBInteraction000418955
      WBInteraction000419268
      WBInteraction000421264
      WBInteraction000421439
      WBInteraction000421482
      WBInteraction000423060
      WBInteraction000424415
      WBInteraction000425371
      WBInteraction000431440
      WBInteraction000444165
      WBInteraction000447970
      WBInteraction000451218
      WBInteraction000452101
      WBInteraction000457932
      WBInteraction000461949
      WBInteraction000465537
      WBInteraction000473337
      WBInteraction000473338
      WBInteraction000500642
      WBInteraction000500990
      WBInteraction000520149
      WBInteraction000542657
      WBInteraction000542660
      WBInteraction000546299
      WBInteraction000546779
      WBInteraction000553138
      WBInteraction000554480
      WBInteraction000555059
      WBInteraction000560168
      WBInteraction000562997
      WBInteraction000571519
      WBInteraction000577488
      WBInteraction000579534
      WBInteraction000582896
  Map_info: Map: X Position: -2.42178 Error: 0.004086
    Positive: Positive_clone: H22K11 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (29)
  Remark: Sequence connection from [Freedman J]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene