WormBase Tree Display for Gene: WBGene00000213
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| WBGene00000213 | Evidence | Author_evidence | Patthy L | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Hodgkin JA | |||||||||
| SMap | S_parent | Sequence | W03G1 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | asm-3 | Person_evidence | WBPerson250 | |||||
| Sequence_name | W03G1.7 | ||||||||
| Molecular_name | W03G1.7a | ||||||||
| W03G1.7a.1 | |||||||||
| CE31626 | |||||||||
| W03G1.7b | |||||||||
| CE39794 | |||||||||
| W03G1.7b.1 | |||||||||
| Other_name | CELE_W03G1.7 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | asm-3 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | asm | ||||||||
| Allele (62) | |||||||||
| Strain | WBStrain00032184 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (26) | |||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00000211 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000212 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00014106 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable acid sphingomyelin phosphodiesterase activity. Involved in lipid droplet disassembly. Predicted to be located in extracellular space and lysosome. Human ortholog(s) of this gene implicated in Niemann-Pick disease type A and Niemann-Pick disease type B. Is an ortholog of human SMPD1 (sphingomyelin phosphodiesterase 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:14504 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11120) | ||||
| DOID:0070112 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11120) | ||||||
| DOID:0070111 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11120) | ||||||
| Molecular_info | Corresponding_CDS | W03G1.7a | |||||||
| W03G1.7b | |||||||||
| Corresponding_CDS_history | W03G1.7:wp82 | ||||||||
| W03G1.7:wp154 | |||||||||
| Corresponding_transcript | W03G1.7a.1 | ||||||||
| W03G1.7b.1 | |||||||||
| Other_sequence (25) | |||||||||
| Associated_feature | WBsf995171 | ||||||||
| WBsf995172 | |||||||||
| WBsf995173 | |||||||||
| WBsf995174 | |||||||||
| WBsf1016561 | |||||||||
| WBsf1016562 | |||||||||
| WBsf229701 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00036248 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00078532 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00090748 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00078636 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00019574 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054718 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1028188 | ||||||||
| Expr1158256 | |||||||||
| Expr2027693 | |||||||||
| Drives_construct | WBCnstr00037659 | ||||||||
| Construct_product | WBCnstr00037659 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (314) | |||||||||
| Interaction | WBInteraction000382405 | ||||||||
| WBInteraction000405063 | |||||||||
| WBInteraction000571176 | |||||||||
| Map_info | Map | IV | Position | -25.8507 | Error | 0.012915 | |||
| Positive | Positive_clone | W03G1 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00032243 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041633 | |||||||||
| WBPaper00042257 | |||||||||
| WBPaper00045355 | |||||||||
| WBPaper00049081 | |||||||||
| WBPaper00053423 | |||||||||
| WBPaper00053559 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058665 | |||||||||
| WBPaper00059117 | |||||||||
| WBPaper00059755 | |||||||||
| WBPaper00062855 | |||||||||
| WBPaper00062931 | |||||||||
| WBPaper00065020 | |||||||||
| WBPaper00065215 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
