WormBase Tree Display for Gene: WBGene00000114
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| WBGene00000114 | SMap | S_parent | Sequence | F13D12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | alh-8 | Person_evidence | WBPerson651 | |||||
| Sequence_name | F13D12.4 | ||||||||
| Molecular_name | F13D12.4a | ||||||||
| F13D12.4a.1 | |||||||||
| CE02183 | |||||||||
| F13D12.4b | |||||||||
| CE36262 | |||||||||
| F13D12.4b.1 | |||||||||
| Other_name | CELE_F13D12.4 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | alh-8 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | alh | ||||||||
| Allele (41) | |||||||||
| Strain | WBStrain00040157 | ||||||||
| WBStrain00051090 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (20) | |||||||||
| Ortholog (36) | |||||||||
| Paralog (11) | |||||||||
| Structured_description | Concise_description | alh-8 is orthologous to the human gene METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE (ALDH6A1; OMIM:603178), which when mutated leads to MMSDH deficiency. | Curator_confirmed | WBPerson1823 | |||||
| WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable malonate-semialdehyde dehydrogenase (acetylating) activity and methylmalonate-semialdehyde dehydrogenase (acylating, NAD) activity. Predicted to be involved in thymine catabolic process and valine catabolic process. Located in mitochondrion. Is an ortholog of human ALDH6A1 (aldehyde dehydrogenase 6 family member A1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F13D12.4a | |||||||
| F13D12.4b | |||||||||
| Corresponding_transcript | F13D12.4a.1 | ||||||||
| F13D12.4b.1 | |||||||||
| Other_sequence (168) | |||||||||
| Associated_feature | WBsf644715 | ||||||||
| WBsf644716 | |||||||||
| WBsf658271 | |||||||||
| WBsf658272 | |||||||||
| WBsf981293 | |||||||||
| WBsf989871 | |||||||||
| WBsf222186 | |||||||||
| WBsf222187 | |||||||||
| WBsf222188 | |||||||||
| WBsf222189 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00044501 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00030884 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00013215 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00097981 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9518 | ||||||||
| Expr1024671 | |||||||||
| Expr1030061 | |||||||||
| Expr1148451 | |||||||||
| Expr2009310 | |||||||||
| Expr2027546 | |||||||||
| Drives_construct | WBCnstr00037722 | ||||||||
| Construct_product | WBCnstr00014083 | ||||||||
| WBCnstr00037722 | |||||||||
| Microarray_results (45) | |||||||||
| Expression_cluster (183) | |||||||||
| SAGE_tag | SAGE:aagaagctcg | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:tctctcttga | Strand | Antisense | |||||||
| SAGE:ttcaaacttc | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:cattgttgacgggtcag | Strand | Antisense | |||||||
| Interaction (76) | |||||||||
| Map_info | Map | II | Position | 4.01627 | Error | 0.005159 | |||
| Positive | Positive_clone | F13D12 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038444 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00042257 | |||||||||
| WBPaper00049812 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064263 | |||||||||
| WBPaper00065140 | |||||||||
| WBPaper00065288 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
