WormBase Tree Display for Gene: WBGene00000079
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| WBGene00000079 | Evidence | Paper_evidence | WBPaper00005596 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | H15N14 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | adr-1 | Person_evidence | WBPerson1829 | |||||
| Sequence_name | H15N14.1 | ||||||||
| Molecular_name (15) | |||||||||
| Other_name | adr-1c | ||||||||
| adr-1d | |||||||||
| adr-1e | |||||||||
| adr-1f | |||||||||
| adr-1g | |||||||||
| CELE_H15N14.1 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | adr-1 | ||||||||
| DB_info | Database | AceView | gene | 1I353 | |||||
| WormQTL | gene | WBGene00000079 | |||||||
| WormFlux | gene | WBGene00000079 | |||||||
| NDB | locus_tag | CELE_H15N14.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000079|UniProtKB=Q9U3D6 | |||||||
| family | PTHR10910 | ||||||||
| NCBI | gene | 172542 | |||||||
| RefSeq | protein | NM_182001.5 | |||||||
| NM_001392607.1 | |||||||||
| NM_182003.5 | |||||||||
| NM_059752.7 | |||||||||
| NM_059753.8 | |||||||||
| SwissProt | UniProtAcc | Q9U3D6 | |||||||
| TREEFAM | TREEFAM_ID | TF350325 | |||||||
| UniProt_GCRP | UniProtAcc | Q9U3D6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:20 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | adr | ||||||||
| Allele (41) | |||||||||
| Strain (15) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (26) | |||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00000080 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00008397 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00011253 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00018857 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00022388 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | adr-1 encodes, through alternative splicing, at least five isoforms of an adenosine deaminase that acts on RNA (ADAR); ADARs are RNA-editing enzymes that deaminate adenosines to create inosines in double-stranded RNA (dsRNA); adr-1 is expressed in embryos, most or all neurons (e.g., sensory neurons and cilia, the ventral nerve cord, motor neurons and interneurons) and in the developing (but not the adult) vulva; ADR-1 is required for ADAR activity in vivo, and for normal chemotaxis and vulval development; ADR-1 is also required (redundantly with ADR-2) to prevent the silencing of transgenes in somatic tissues by RNAi; ADR-1 (with ADR-2) may protect transgenic RNA from RNAi silencing by deaminating transgenic dsRNA; ADR-1 contains a glutamine/asparagine-rich domain, as well as two N-terminal double-stranded RNA-binding motifs. | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00005518 | |||||||||
| WBPaper00005596 | |||||||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables mRNA binding activity. Involved in several processes, including adenosine to inosine editing; determination of adult lifespan; and regulation of vulval development. Located in cytosolic ribosome and nucleus. Expressed in body wall musculature; intestine; nervous system; and vulva. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | H15N14.1c | |||||||
| H15N14.1d | |||||||||
| H15N14.1e | |||||||||
| H15N14.1f | |||||||||
| H15N14.1g | |||||||||
| Corresponding_CDS_history | H15N14.1a:wp93 | ||||||||
| H15N14.1b:wp90 | |||||||||
| H15N14.1b:wp93 | |||||||||
| Corresponding_transcript | H15N14.1c.1 | ||||||||
| H15N14.1d.1 | |||||||||
| H15N14.1e.1 | |||||||||
| H15N14.1f.1 | |||||||||
| H15N14.1g.1 | |||||||||
| Other_sequence (34) | |||||||||
| Associated_feature | WBsf654806 | ||||||||
| WBsf656567 | |||||||||
| WBsf984279 | |||||||||
| WBsf218070 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00113526 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00003276 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085502 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033718 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00049411 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00066848 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043426 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2272 | ||||||||
| Expr8253 | |||||||||
| Expr8254 | |||||||||
| Expr8255 | |||||||||
| Expr15044 | |||||||||
| Expr15045 | |||||||||
| Expr1030035 | |||||||||
| Expr1153146 | |||||||||
| Expr2009239 | |||||||||
| Expr2027476 | |||||||||
| Drives_construct | WBCnstr00010745 | ||||||||
| WBCnstr00037748 | |||||||||
| WBCnstr00041884 | |||||||||
| Construct_product | WBCnstr00010745 | ||||||||
| WBCnstr00037748 | |||||||||
| WBCnstr00041885 | |||||||||
| Regulate_expr_cluster (16) | |||||||||
| Antibody | WBAntibody00001454 | ||||||||
| Microarray_results (43) | |||||||||
| Expression_cluster (118) | |||||||||
| Interaction (92) | |||||||||
| Map_info | Map | I | Position | 2.35504 | Error | 0.004979 | |||
| Positive | Positive_clone | H15N14 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4145 | |||||||
| 4160 | |||||||||
| 5503 | |||||||||
| 5665 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (33) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
