WormBase Tree Display for Gene: WBGene00000041
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| WBGene00000041 | SMap | S_parent | Sequence | CHROMOSOME_III | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | aco-2 | |||||||
| Sequence_name | F54H12.1 | ||||||||
| Molecular_name | F54H12.1a | ||||||||
| F54H12.1a.1 | |||||||||
| CE25005 | |||||||||
| F54H12.1c | |||||||||
| CE32436 | |||||||||
| F54H12.1c.1 | |||||||||
| F54H12.1c.2 | |||||||||
| F54H12.1c.3 | |||||||||
| Other_name | CELE_F54H12.1 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | aco-2 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:19 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | aco | ||||||||
| Allele (46) | |||||||||
| Strain | WBStrain00049342 | ||||||||
| WBStrain00054746 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (19) | |||||||||
| Ortholog (44) | |||||||||
| Paralog | WBGene00000040 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Concise_description | aco-2 encodes an aconitase homolog that is required for embryonic viability, fertility, locomotion, and vulval morphogenesis, and perhaps for normal lifespan. | Paper_evidence | WBPaper00004424 | |||||
| WBPaper00005655 | |||||||||
| WBPaper00013184 | |||||||||
| WBPaper00013598 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable 4 iron, 4 sulfur cluster binding activity and aconitate hydratase activity. Predicted to be involved in tricarboxylic acid cycle. Located in mitochondrion. Expressed widely. Human ortholog(s) of this gene implicated in infantile cerebellar-retinal degeneration and optic atrophy 9. Is an ortholog of human ACO2 (aconitase 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0050883 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:118) | ||||
| DOID:0111442 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:118) | ||||||
| Molecular_info | Corresponding_CDS | F54H12.1a | |||||||
| F54H12.1c | |||||||||
| Corresponding_CDS_history | F54H12.1b:wp252 | ||||||||
| Corresponding_transcript | F54H12.1a.1 | ||||||||
| F54H12.1c.1 | |||||||||
| F54H12.1c.2 | |||||||||
| F54H12.1c.3 | |||||||||
| Other_sequence (145) | |||||||||
| Associated_feature (16) | |||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern | Expr4043 | ||||||||
| Expr1023629 | |||||||||
| Expr1030021 | |||||||||
| Expr1152184 | |||||||||
| Expr2009165 | |||||||||
| Expr2027402 | |||||||||
| Drives_construct | WBCnstr00037776 | ||||||||
| Construct_product | WBCnstr00037776 | ||||||||
| Microarray_results (42) | |||||||||
| Expression_cluster (179) | |||||||||
| Interaction (125) | |||||||||
| Map_info | Map | III | Position | -0.455963 | Error | 0.00173 | |||
| Positive | Positive_clone | F54H12 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (20) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
