WormBase Tree Display for Gene: WBGene00000005
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| WBGene00000005 | Evidence | Author_evidence | Veljkovic E | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Verrey F | |||||||||
| SMap | S_parent | Sequence | T13A10 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | aat-4 | |||||||
| Sequence_name | T13A10.10 | ||||||||
| Molecular_name | T13A10.10a | ||||||||
| T13A10.10a.1 | |||||||||
| CE35008 | |||||||||
| T13A10.10b | |||||||||
| Other_name | CELE_T13A10.10 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | aat-4 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00000005 | |||||
| WormFlux | gene | WBGene00000005 | |||||||
| NDB | locus_tag | CELE_T13A10.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00000005|UniProtKB=Q7YXH5 | |||||||
| family | PTHR11785 | ||||||||
| NCBI | gene | 177388 | |||||||
| RefSeq | protein | NR_131543.1 | |||||||
| NM_001028211.4 | |||||||||
| TrEMBL | UniProtAcc | Q7YXH5 | |||||||
| UniProt_GCRP | UniProtAcc | Q7YXH5 | |||||||
| RNAcentral | URSid | URS00002346CF | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:19 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | aat | ||||||||
| Allele (132) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00082895 | ||||||||
| 00082896 | |||||||||
| 00082897 | |||||||||
| 00082898 | |||||||||
| 00082899 | |||||||||
| 00106523 | |||||||||
| 00106524 | |||||||||
| 00106525 | |||||||||
| Ortholog (32) | |||||||||
| Paralog (12) | |||||||||
| Structured_description | Concise_description | aat-4 encodes a predicted amino acid transporter catalytic subunit; unlike catalytic subunits in other organisms, however, AAT-4 does not contain the highly conserved cysteine residue known to facilitate covalent interaction with a glycoprotein subunit, suggesting that AAT-4 does not require this residue for heterodimer formation or, alternatively, does not require the glycoprotein subunit for function. | Paper_evidence | WBPaper00006408 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 02 Mar 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable L-amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport. Predicted to be located in membrane. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T13A10.10a | |||||||
| Corresponding_CDS_history | T13A10.10a:wp174 | ||||||||
| T13A10.10b:wp174 | |||||||||
| Corresponding_transcript | T13A10.10b | ||||||||
| T13A10.10a.1 | |||||||||
| Other_sequence | Oden_isotig01888 | ||||||||
| Oden_isotig01889 | |||||||||
| Oden_isotig01891 | |||||||||
| Dviv_isotig12652 | |||||||||
| Oden_isotig01890 | |||||||||
| JI176936.1 | |||||||||
| Dviv_isotig12653 | |||||||||
| CBC14700_1 | |||||||||
| Dviv_isotig12654 | |||||||||
| Associated_feature | WBsf230147 | ||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Expr1025936 | ||||||||
| Expr1156818 | |||||||||
| Expr2009067 | |||||||||
| Expr2027303 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (143) | |||||||||
| Interaction | WBInteraction000309425 | ||||||||
| WBInteraction000314773 | |||||||||
| WBInteraction000465674 | |||||||||
| WBInteraction000521016 | |||||||||
| Map_info | Map | IV | Position | 3.11439 | Error | 0.00084 | |||
| Positive | Positive_clone | T13A10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006408 | ||||||||
| WBPaper00024381 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
