WormBase Tree Display for CDS: W02C12.3a
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| W02C12.3a | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | W02C12 | |||
| Structure | Source_exons | 1 | 288 | |||
| 400 | 495 | |||||
| 651 | 725 | |||||
| 821 | 949 | |||||
| 1145 | 1289 | |||||
| 1348 | 1423 | |||||
| 1860 | 2148 | |||||
| 2198 | 2348 | |||||
| 2414 | 2490 | |||||
| 3053 | 3223 | |||||
| DB_info | Database | SwissProt | UniProtAcc | H2KZZ2 | ||
| UniProtIsoformAcc | H2KZZ2-2 | |||||
| UniProt | UniProtAcc | H2KZZ2 | ||||
| UniProt_GCRP | UniProtAcc | H2KZZ2 | ||||
| AlphaFold | entry | H2KZZ2 | ||||
| NCBI_protein | GI_number | GI:351062574 | ||||
| Protein_id | CHROMOSOME_IV | CCD70587 | 1 | |||
| DB_remark | HLH-30 protein; contains similarity to Pfam domain PF00010 (Helix-loop-helix DNA-binding domain); contains similarity to Interpro domains IPR036638 (Helix-loop-helix DNA-binding domain superfamily), IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Accession_evidence | EMBL | BJ127132 | |||
| Visible | Gene | WBGene00020930 | ||||
| Corresponding_transcript | W02C12.3a.1 | |||||
| W02C12.3a.2 | ||||||
| Corresponding_protein | CE14416 | |||||
| Corresponding_PCR_product | cenix:116-e12 | |||||
| mv_W02C12.3 | ||||||
| sjj_W02C12.3 | ||||||
| Corresponding_oligo_set (20) | ||||||
| Matching_cDNA (40) | ||||||
| RNAi_result (26) | ||||||
| Microarray_results (35) | ||||||
| Brief_identification | Helix-loop-helix protein 30 | Accession_evidence | UniProt | SP:H2KZZ2 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 18 Sep 2013 00:00:00 | WBPerson4025 | ||||
| Remark | SL1 trans-spliced; see yk75f5.5 | |||||
| Associated_feature | WBsf001011 | |||||
| WBsf019629 | ||||||
| Method | curated |
