WormBase Tree Display for CDS: T12B5.6c
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| T12B5.6c | Evidence | Curator_confirmed | WBPerson1983 | |||
|---|---|---|---|---|---|---|
| Inferred_automatically | make_isoforms.pl | |||||
| SMap | S_parent | Sequence | T12B5 | |||
| Structure | Source_exons | 1 | 113 | |||
| 1689 | 2229 | |||||
| 2271 | 2483 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | A0A163VTZ6 | ||
| UniProt | UniProtAcc | A0A163VTZ6 | ||||
| AlphaFold | entry | A0A163VTZ6 | ||||
| NCBI_protein | GI_number | GI:1027499666 | ||||
| Protein_id | CHROMOSOME_III | SAP35538 | 1 | |||
| DB_remark | FBXA-55 protein; contains similarity to Pfam domain PF01827 (FTH domain); contains similarity to Interpro domains IPR002900 (Domain of unknown function DUF38/FTH, Caenorhabditis species), IPR040161 (F-box A protein FB224) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Curator_confirmed | WBPerson1983 | ||||
| Visible | Gene | WBGene00020453 | ||||
| Corresponding_transcript | T12B5.6c.1 | |||||
| Corresponding_protein | CE51680 | |||||
| Corresponding_PCR_product | TH:328D5 | |||||
| cenix:328-d5 | ||||||
| mv_T12B5.6 | ||||||
| sjj_T12B5.6 | ||||||
| Corresponding_oligo_set (19) | ||||||
| Matching_cDNA | adult_Nanopore_Roach_59691 | |||||
| L3_Nanopore_Roach_56056 | ||||||
| L1_Nanopore_Li_95922 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result | WBRNAi00035506 | |||||
| WBRNAi00018634 | ||||||
| WBRNAi00053190 | ||||||
| WBRNAi00006619 | ||||||
| Microarray_results (20) | ||||||
| Brief_identification | DUF38 domain-containing protein | Accession_evidence | UniProt | TR:A0A163VTZ6 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 29 Mar 2016 17:10:23 | WBPerson1983 | ||||
| Remark | [160104 pad] Created this isoform based on the RNASeq splice data. | Curator_confirmed | WBPerson1983 | |||
| From_analysis | RNASeq_splice | |||||
| Method | curated |
