WormBase Tree Display for CDS: PPA31683
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| PPA31683 | SMap | S_parent | Sequence | PPA_ChrV | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (16) | |||||
| DB_info | Database | pristionchus.org | cds | gene-UMM-S13-11.16 | ||
| DB_remark | PPA-UNC-101 protein; contains similarity to Pfam domains PF00928 (Adaptor complexes medium subunit family), PF01217 (Clathrin adaptor complex small chain); contains similarity to Interpro domains IPR022775 (AP complex, mu/sigma subunit), IPR028565 (Mu homology domain), IPR036168 (AP-2 complex subunit mu, C-terminal superfamily), IPR011012 (Longin-like domain superfamily), IPR001392 (Clathrin adaptor, mu subunit) | |||||
| Origin | From_laboratory | RS | ||||
| Species | Pristionchus pacificus | |||||
| Properties | Coding | CDS | ||||
| CDS_predicted_by | pristionchus.org | |||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | WBGene00204547 | ||||
| Corresponding_transcript | PPA31683.1 | |||||
| Corresponding_protein | PP52691 | |||||
| Corresponding_oligo_set | GPL14372_Probes_39796 | |||||
| GPL14372_Probes_39797 | ||||||
| GPL14372_Probes_39799 | ||||||
| Matching_cDNA | AI986545 | Inferred_automatically | transcript_builder.pl | |||
| FG100933 | Inferred_automatically | transcript_builder.pl | ||||
| Microarray_results | GPL14372_Probes_39796 | |||||
| GPL14372_Probes_39797 | ||||||
| GPL14372_Probes_39799 | ||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
| Remark | [171116 mh6] renamed from gene-UMM-S13-11.16 | Curator_confirmed | WBPerson4055 | |||
| Method | curated |
