WormBase Tree Display for CDS: PPA31683
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PPA31683 | SMap | S_parent | Sequence | PPA_ChrV | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 69 | |||
3590 | 3667 | |||||
3881 | 3967 | |||||
4058 | 4127 | |||||
4197 | 4286 | |||||
4377 | 4485 | |||||
4582 | 4659 | |||||
4780 | 4846 | |||||
4966 | 5092 | |||||
5159 | 5222 | |||||
5280 | 5358 | |||||
5467 | 5538 | |||||
5689 | 5771 | |||||
5867 | 5943 | |||||
6017 | 6141 | |||||
6213 | 6311 | |||||
DB_info | Database | pristionchus.org | cds | gene-UMM-S13-11.16 | ||
DB_remark | PPA-UNC-101 protein; contains similarity to Pfam domains PF00928 (Adaptor complexes medium subunit family), PF01217 (Clathrin adaptor complex small chain); contains similarity to Interpro domains IPR022775 (AP complex, mu/sigma subunit), IPR028565 (Mu homology domain), IPR036168 (AP-2 complex subunit mu, C-terminal superfamily), IPR011012 (Longin-like domain superfamily), IPR001392 (Clathrin adaptor, mu subunit) | |||||
Origin | From_laboratory | RS | ||||
Species | Pristionchus pacificus | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | pristionchus.org | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00204547 | ||||
Corresponding_transcript | PPA31683.1 | |||||
Corresponding_protein | PP52691 | |||||
Corresponding_oligo_set | GPL14372_Probes_39796 | |||||
GPL14372_Probes_39797 | ||||||
GPL14372_Probes_39799 | ||||||
Matching_cDNA | AI986545 | Inferred_automatically | transcript_builder.pl | |||
FG100933 | Inferred_automatically | transcript_builder.pl | ||||
Microarray_results | GPL14372_Probes_39796 | |||||
GPL14372_Probes_39797 | ||||||
GPL14372_Probes_39799 | ||||||
RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | ||
WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||
Remark | [171116 mh6] renamed from gene-UMM-S13-11.16 | Curator_confirmed | WBPerson4055 | |||
Method | curated |