WormBase Tree Display for CDS: K11D12.9
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| K11D12.9 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | K11D12 | |||
| Structure | Source_exons | 1 | 21 | |||
| 442 | 629 | |||||
| 729 | 833 | |||||
| 1609 | 1711 | |||||
| 1766 | 1930 | |||||
| 1988 | 2209 | |||||
| 2256 | 2366 | |||||
| 3450 | 3737 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | O44624 | ||
| UniProt | UniProtAcc | O44624 | ||||
| UniProt_GCRP | UniProtAcc | O44624 | ||||
| AlphaFold | entry | O44624 | ||||
| NCBI_protein | GI_number | GI:351057802 | ||||
| TREEFAM | TREEFAM_ID | TF351144 | ||||
| Protein_id | CHROMOSOME_V | CCD64403 | 1 | |||
| DB_remark | EXC-14 protein; contains similarity to Pfam domain PF13920 (Zinc finger, C3HC4 type (RING finger)); contains similarity to Interpro domains IPR001841 (Zinc finger, RING-type), IPR013083 (Zinc finger, RING/FYVE/PHD-type) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00019649 | ||||
| Corresponding_transcript | K11D12.9.1 | |||||
| Corresponding_protein | CE29517 | |||||
| Corresponding_PCR_product | cenix:103-a5 | |||||
| mv_K11D12.9 | ||||||
| sjj2_K11D12.9 | ||||||
| sjj_K11D12.9 | ||||||
| Corresponding_oligo_set (16) | ||||||
| Matching_cDNA (15) | ||||||
| RNAi_result | WBRNAi00088876 | |||||
| WBRNAi00070346 | ||||||
| WBRNAi00088862 | ||||||
| WBRNAi00070347 | ||||||
| WBRNAi00088941 | ||||||
| WBRNAi00070345 | ||||||
| WBRNAi00088903 | ||||||
| WBRNAi00034282 | ||||||
| WBRNAi00050594 | ||||||
| WBRNAi00094769 | ||||||
| Microarray_results (18) | ||||||
| Brief_identification | RING-type domain-containing protein | Accession_evidence | UniProt | TR:O44624 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 05 Mar 2002 00:00:00 | WBPerson615 | ||||
| Remark | SL1 trans-spliced; see yk755g05.5 | |||||
| [010920 js] removed the first exon and added exons 1-3 based on EST data - | Curator_confirmed | WBPerson615 | ||||
| [020305 js] yk755g05.5 indicates the splice sites in intron 5 are not correct, but it uses very unusual splice sites that puts the rest of the exons out of frame and doesn't match the conserved sequence in C. briggsea - | Curator_confirmed | WBPerson615 | ||||
| Associated_feature | WBsf015592 | |||||
| Method | curated |
