WormBase Tree Display for CDS: K01C8.1
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K01C8.1 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | K01C8 | |||
Structure | Source_exons | 1 | 51 | |||
303 | 495 | |||||
549 | 667 | |||||
725 | 1030 | |||||
1087 | 1305 | |||||
1392 | 1544 | |||||
1594 | 2052 | |||||
DB_info | Database | TrEMBL | UniProtAcc | Q21080 | ||
UniProt | UniProtAcc | Q21080 | ||||
UniProt_GCRP | UniProtAcc | Q21080 | ||||
AlphaFold | entry | Q21080 | ||||
NCBI_protein | GI_number | GI:50507470 | ||||
TREEFAM | TREEFAM_ID | TF314863 | ||||
Protein_id | CHROMOSOME_II | CAA88854 | 2 | |||
DB_remark | SRDH-1 protein; contains similarity to Pfam domains PF00291 (Pyridoxal-phosphate dependent enzyme), PF01842 (ACT domain); contains similarity to Interpro domains IPR005789 (Threonine dehydratase, catabolic), IPR002912 (ACT domain), IPR036052 (Tryptophan synthase beta chain-like, PALP domain superfamily), IPR001926 (Tryptophan synthase beta chain-like, PALP domain) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00010456 | ||||
Corresponding_transcript | K01C8.1.1 | |||||
K01C8.1.2 | ||||||
Corresponding_protein | CE36943 | |||||
Corresponding_PCR_product | cenix:140-f2 | |||||
mv_G_YK7386 | ||||||
sjj_K01C8.1 | ||||||
Corresponding_oligo_set (17) | ||||||
Matching_cDNA (80) | ||||||
RNAi_result | WBRNAi00033544 | |||||
WBRNAi00075854 | ||||||
WBRNAi00016385 | ||||||
WBRNAi00049602 | ||||||
Microarray_results (19) | ||||||
Brief_identification | L-serine deaminase | Accession_evidence | UniProt | TR:Q21080 | ||
RNASeq_FPKM (74) | ||||||
Last_reviewed | 24 Jun 2004 00:00:00 | WBPerson1983 | ||||
Remark | [040624 pad] Gene prediction altered to represent new EST data, altered splicing of intron 5, also made confirmed intron 5' of prediction UTR. | Accession_evidence | NDB | BJ778752 | ||
Curator_confirmed | WBPerson1983 | |||||
Associated_feature | WBsf008687 | |||||
Method | curated |