WormBase Tree Display for CDS: F56H11.1f
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| F56H11.1f | SMap | S_parent | Sequence | CHROMOSOME_IV | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (12) | |||||
| DB_info | Database | TrEMBL | UniProtAcc | A0A061ACF5 | ||
| UniProt | UniProtAcc | A0A061ACF5 | ||||
| AlphaFold | entry | A0A061ACF5 | ||||
| NCBI_protein | GI_number | GI:646227091 | ||||
| Protein_id | CHROMOSOME_IV | CDR32632 | 1 | |||
| DB_remark | FBL-1 protein; contains similarity to Pfam domains PF07645 (Calcium-binding EGF domain), PF12662 (Complement Clr-like EGF-like); contains similarity to Interpro domains IPR001881 (EGF-like calcium-binding domain), IPR009030 (Growth factor receptor cysteine-rich domain superfamily), IPR000742 (EGF-like domain), IPR026823 (Complement Clr-like EGF domain), IPR049883 (NOTCH1 EGF-like calcium-binding domain), IPR017048 (Fibulin-1) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Curator_confirmed | WBPerson4025 | ||||
| Visible | Gene | WBGene00001403 | ||||
| Corresponding_transcript | F56H11.1f.1 | |||||
| Corresponding_protein | CE49772 | |||||
| Corresponding_PCR_product | cenix:148-a7 | |||||
| cenix:29-h3 | ||||||
| cenix:37-h10 | ||||||
| mv_AAC28321 | ||||||
| mv_AAC28322 | ||||||
| sjj_F56H11.1 | ||||||
| sjj_T05A1.6 | ||||||
| Corresponding_oligo_set (25) | ||||||
| RNAi_result | WBRNAi00062661 | |||||
| WBRNAi00048771 | ||||||
| WBRNAi00116170 | ||||||
| WBRNAi00027780 | ||||||
| WBRNAi00048773 | ||||||
| WBRNAi00015848 | ||||||
| WBRNAi00110311 | ||||||
| WBRNAi00018168 | ||||||
| WBRNAi00048772 | ||||||
| Microarray_results (27) | ||||||
| Brief_identification | Fibulin-1 | Accession_evidence | UniProt | TR:A0A061ACF5 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 21 Oct 2014 00:00:00 | WBPerson4025 | ||||
| Remark | [140408 gw3] Created this isoform based on the RNASeq splice data. | Curator_confirmed | WBPerson4025 | |||
| From_analysis | RNASeq_Hillier_elegans | |||||
| [141021 gw3] The non-homologous mutually exclusive exon splicing in the 5th exon of these isoforms has been confirmed by RT-PCR in this paper. | Paper_evidence | WBPaper00045789 | ||||
| Curator_confirmed | WBPerson4025 | |||||
| Method | curated |
