WormBase Tree Display for CDS: F56H11.1c
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| F56H11.1c | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_IV | |||
| Structure | Source_exons (14) | |||||
| DB_info | Database | SwissProt | UniProtAcc | O77469 | ||
| UniProtIsoformAcc | O77469-1 | |||||
| UniProt | UniProtAcc | O77469 | ||||
| UniProt_GCRP | UniProtAcc | O77469 | ||||
| AlphaFold | entry | O77469 | ||||
| NCBI_protein | GI_number | GI:62554032 | ||||
| Protein_id | CHROMOSOME_IV | CAA92962 | 2 | |||
| DB_remark | FBL-1 protein; contains similarity to Pfam domains PF07645 (Calcium-binding EGF domain), PF12662 (Complement Clr-like EGF-like); contains similarity to Interpro domains IPR001881 (EGF-like calcium-binding domain), IPR009030 (Growth factor receptor cysteine-rich domain superfamily), IPR000742 (EGF-like domain), IPR026823 (Complement Clr-like EGF domain), IPR049883 (NOTCH1 EGF-like calcium-binding domain), IPR017048 (Fibulin-1) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Accession_evidence | NDB | AY851363 | |||
| Visible | Gene | WBGene00001403 | ||||
| Corresponding_transcript | F56H11.1c.1 | |||||
| Corresponding_protein | CE38374 | |||||
| Corresponding_PCR_product | cenix:148-a7 | |||||
| cenix:29-h3 | ||||||
| cenix:37-h10 | ||||||
| mv_AAC28321 | ||||||
| mv_AAC28322 | ||||||
| sjj_F56H11.1 | ||||||
| sjj_T05A1.6 | ||||||
| Corresponding_oligo_set (31) | ||||||
| Matching_cDNA (22) | ||||||
| RNAi_result | WBRNAi00062661 | |||||
| WBRNAi00048771 | ||||||
| WBRNAi00116170 | ||||||
| WBRNAi00027780 | ||||||
| WBRNAi00048773 | ||||||
| WBRNAi00015848 | ||||||
| WBRNAi00110311 | ||||||
| WBRNAi00018168 | ||||||
| WBRNAi00048772 | ||||||
| Microarray_results (33) | ||||||
| Brief_identification | Fibulin-1 | Accession_evidence | UniProt | SP:O77469 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 21 Oct 2014 00:00:00 | WBPerson4025 | ||||
| Remark | [010105 dl] original prediction contains exons supported by BlastX similarity that are not present in the cDNA sequence | Curator_confirmed | WBPerson1846 | |||
| [050315 dl] Modified prediction in line with cDNA sequence | Curator_confirmed | WBPerson1846 | ||||
| [141021 gw3] The non-homologous mutually exclusive exon splicing in the 5th exon of these isoforms has been confirmed by RT-PCR in this paper. | Paper_evidence | WBPaper00045789 | ||||
| Curator_confirmed | WBPerson4025 | |||||
| Method | curated |
