WormBase Tree Display for CDS: F54D10.1
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| F54D10.1 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F54D10 | |||
| Structure | Source_exons | 1 | 555 | |||
| DB_info | Database | TrEMBL | UniProtAcc | G5EE88 | ||
| UniProt | UniProtAcc | G5EE88 | ||||
| UniProt_GCRP | UniProtAcc | G5EE88 | ||||
| AlphaFold | entry | G5EE88 | ||||
| NCBI_protein | GI_number | GI:351050265 | ||||
| TREEFAM | TREEFAM_ID | TF300142 | ||||
| Protein_id | CHROMOSOME_II | CCD64807 | 1 | |||
| DB_remark | SKR-15 protein; contains similarity to Pfam domains PF01466 (Skp1 family, dimerisation domain), PF03931 (Skp1 family, tetramerisation domain); contains similarity to Interpro domains IPR001232 (S-phase kinase-associated protein 1-like), IPR036296 (SKP1-like, dimerisation domain superfamily), IPR016072 (SKP1 component, dimerisation), IPR016897 (S-phase kinase-associated protein 1), IPR011333 (SKP1/BTB/POZ domain superfamily), IPR016073 (SKP1 component, POZ domain) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00004821 | ||||
| Corresponding_transcript | F54D10.1.1 | |||||
| Corresponding_protein | CE19451 | |||||
| Corresponding_PCR_product | cenix:162-h10 | |||||
| mv_F54D10.1 | ||||||
| sjj_F54D10.1 | ||||||
| Corresponding_oligo_set (16) | ||||||
| Matching_cDNA | male_Nanopore_Roach_158150 | |||||
| young_adult_Nanopore_Roach_131838 | ||||||
| adult_Nanopore_Roach_108328 | ||||||
| RNAi_result | WBRNAi00086805 | |||||
| WBRNAi00064131 | ||||||
| WBRNAi00069093 | ||||||
| WBRNAi00048285 | ||||||
| WBRNAi00098054 | ||||||
| WBRNAi00094810 | ||||||
| WBRNAi00032773 | ||||||
| WBRNAi00098129 | ||||||
| WBRNAi00015598 | ||||||
| WBRNAi00086794 | ||||||
| Microarray_results (17) | ||||||
| Brief_identification | Skp1-related protein | Accession_evidence | UniProt | TR:G5EE88 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
