WormBase Tree Display for CDS: F53F10.2c
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F53F10.2c | SMap | S_parent | Sequence | F53F10 | |
---|---|---|---|---|---|
Structure | Source_exons | 1 | 26 | ||
391 | 433 | ||||
DB_info | Database | TrEMBL | UniProtAcc | A0A2K5ATM2 | |
UniProt | UniProtAcc | A0A2K5ATM2 | |||
AlphaFold | entry | A0A2K5ATM2 | |||
NCBI_protein | GI_number | GI:1394370981 | |||
Protein_id | CHROMOSOME_I | SPC47130 | 2 | ||
Origin | From_laboratory | RW | |||
Species | Caenorhabditis elegans | ||||
Properties | Coding | CDS | |||
Prediction_status | Confirmed | ||||
Isoform | Curator_confirmed | WBPerson4025 | |||
Visible | Gene | WBGene00018764 | |||
Corresponding_transcript | F53F10.2c.1 | ||||
F53F10.2c.2 | |||||
Corresponding_protein | CE52499 | ||||
Matching_cDNA (156) | |||||
RNASeq_FPKM (74) | |||||
Last_reviewed | 13 Dec 2017 11:08:40 | WBPerson4025 | |||
Remark | This small isoform was added to represent the small open reading frame (sORF) described in the database 'sORF.org'. It is possible that this is a 'micro ORF'. No initial Methionine codon is present; it is possible that this uses a non-canonical initiation codon. | Paper_evidence | WBPaper00053415 | ||
Curator_confirmed | WBPerson4025 | ||||
[180510 gw3] This has a non-canonical initiation site. | |||||
[180510 gw3] This is a possible 'micro ORF'. | |||||
This starts with a codon for Leucine which is an acceptable alternative initiation codon in the NCBI translation table | |||||
Associated_feature | WBsf000595 | ||||
WBsf014560 | |||||
Method | curated |