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WormBase Tree Display for CDS: F53F10.2c

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Name Class

F53F10.2cSMapS_parentSequenceF53F10
StructureSource_exons126
391433
DB_infoDatabaseTrEMBLUniProtAccA0A2K5ATM2
UniProtUniProtAccA0A2K5ATM2
AlphaFoldentryA0A2K5ATM2
NCBI_proteinGI_numberGI:1394370981
Protein_idCHROMOSOME_ISPC471302
OriginFrom_laboratoryRW
SpeciesCaenorhabditis elegans
PropertiesCodingCDS
Prediction_statusConfirmed
IsoformCurator_confirmedWBPerson4025
VisibleGeneWBGene00018764
Corresponding_transcriptF53F10.2c.1
F53F10.2c.2
Corresponding_proteinCE52499
Matching_cDNA (156)
RNASeq_FPKM (74)
Last_reviewed13 Dec 2017 11:08:40WBPerson4025
RemarkThis small isoform was added to represent the small open reading frame (sORF) described in the database 'sORF.org'. It is possible that this is a 'micro ORF'. No initial Methionine codon is present; it is possible that this uses a non-canonical initiation codon.Paper_evidenceWBPaper00053415
Curator_confirmedWBPerson4025
[180510 gw3] This has a non-canonical initiation site.
[180510 gw3] This is a possible 'micro ORF'.
This starts with a codon for Leucine which is an acceptable alternative initiation codon in the NCBI translation table
Associated_featureWBsf000595
WBsf014560
Methodcurated