WormBase Tree Display for CDS: F46A9.4
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F46A9.4 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F46A9 | |||
Structure | Source_exons | 1 | 81 | |||
263 | 532 | |||||
578 | 751 | |||||
DB_info | Database | TrEMBL | UniProtAcc | G5EDD8 | ||
UniProt | UniProtAcc | G5EDD8 | ||||
UniProt_GCRP | UniProtAcc | G5EDD8 | ||||
AlphaFold | entry | G5EDD8 | ||||
NCBI_protein | GI_number | GI:3877214 | ||||
TREEFAM | TREEFAM_ID | TF354233 | ||||
Protein_id | CHROMOSOME_I | CAB03108 | 1 | |||
DB_remark | SKR-2 protein; contains similarity to Pfam domains PF01466 (Skp1 family, dimerisation domain), PF03931 (Skp1 family, tetramerisation domain); contains similarity to Interpro domains IPR001232 (S-phase kinase-associated protein 1-like), IPR036296 (SKP1-like, dimerisation domain superfamily), IPR016072 (SKP1 component, dimerisation), IPR016897 (S-phase kinase-associated protein 1), IPR011333 (SKP1/BTB/POZ domain superfamily), IPR016073 (SKP1 component, POZ domain) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00004808 | ||||
Corresponding_transcript | F46A9.4.1 | |||||
Corresponding_protein | CE10578 | |||||
Corresponding_PCR_product | cenix:16-h1 | |||||
mv_F46A9.4 | ||||||
sjj_F46A9.4 | ||||||
Corresponding_oligo_set (15) | ||||||
Matching_cDNA (29) | ||||||
RNAi_result (69) | ||||||
Microarray_results (16) | ||||||
Brief_identification | Skp1-related protein | Accession_evidence | UniProt | TR:G5EDD8 | ||
RNASeq_FPKM (74) | ||||||
Remark | 961023: Prosite signature for ATP/GTP binding domain (PS00017) | |||||
Method | curated |