WormBase Tree Display for Sequence: F33C8

F33C8 DNA: F33C8 25306
  SMap: S_child: Gene_child: WBGene00006432 4975 12183
        WBGene00202150 1490 1429
        WBGene00196403 4818 4677
        WBGene00305383 6041 6256
        WBGene00202049 1060 1133
        WBGene00199335 1133 1060
        WBGene00006634 22899 20022
        WBGene00009357 14794 20036
        WBGene00219931 11409 11540
        WBGene00195524 11397 11114
      CDS_child (73)
      Transcript: F33C8.5 11397 11114
        F33C8.6 4818 4677
        F33C8.7 1133 1060
        F33C8.8 1060 1133
        F33C8.9 1490 1429
        F33C8.10 11409 11540
        F33C8.11 6041 6256
        F33C8.1.1 4975 12183
        F33C8.2.1 14794 20036
        F33C8.3.1 22899 20022
      Nongenomic: yk207b12 20086 21358
        yk328g3 9543 12109
      PCR_product (15)
      Allele (473)
      Oligo_set: Aff_F33C8.1 10353 11774
        Aff_F33C8.2 16480 18316
        Aff_F33C8.3 21634 20077
      Feature_object (194)
      Feature_data: F33C8:Polysome 1 25306
        F33C8:TranscriptionallyActiveRegion 1 25306
        F33C8:ChIPSeqTF 1 25306
        F33C8:TRF 1 25306
        F33C8:Dust 1 25306
        F33C8:inverted 1 25306
      Homol_data (19)
  Structure: From: Source: CHROMOSOME_X
    Overlap_right: C05G5 25207
    Overlap_left: F40E10
    Clone_left_end: F33C8 1
      D2085 25207
    Clone_right_end: F40E10 8945
  DB_info: Database: EMBL NDB_AC Z69790
        NDB_SV Z69790.2
    DB_remark: [071129] Sequence correction: insertion 1 bases catgctaagccaattctcatcggccggagGtccaacacctctatccatcgaaccgtgtag @ 11683
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Percy CM
    From_laboratory: HX
    Date_directory: 071129
    Species: Caenorhabditis elegans
    Strain: WBStrain00000001
  Visible: Clone: F33C8
    Reference: WBPaper00015364
      WBPaper00022656
  Properties: Genomic_canonical
    Checksum: MD5: 5a88386ce984f94e32236f6f88ab005d
    Status: Finished: 18 Oct 1995 00:00:00
      Submitted: 28 Feb 1996 00:00:00
      Annotated: 27 Feb 1996 00:00:00
  Map: Sequence-X Ends: Left: 7957
        Right: 7983
  Interpolated_map_position: X 20.291
  Assembly_tags: annotation 11338 11344 part of second half of hairpin loop. There are a number of reads (mostly terms) in both directions over these 7 bases, but the data is not totally clear, so has been edited to the clearest reads.
      1060 1133 run of T's and A's exact number varies pcr product F33C8.0912 shows slippage in the number of copies. This ranges from to 13 to 35 copies
      7867 7871 single stranded with term
      8655 8834 singlr stranded with terninator
      8835 8864 single stranded with terminator
      8917 9025 single stranded across hairpin with terminator
      9100 9138 single stranded across hairpin with terminator
      9243 9274 single stranded with terminator
      9651 9712 single stranded with terminator
      10472 10532 single stranded
      10533 10621 single stranded with term
      10621 10977 single stranded
      10978 10986 single stranded only 9 bases not covered by terninator
      11226 11250 single stranded with only one template across part of a hairpin
      10987 11040 single stranded with terminator
      11251 11288 single stranded with terminator
      11521 11631 single stranded with term
      11632 11721 single stranded with terminator
      11723 11754 single stranded with terminator
      12612 12724 single stranded with treminator
    Clone left end 1 4 left hand end of F33C8
      25207 25210 left end C05G5
    Finished Left 1 1
    Clone right end 8942 8945 end of F40E10
    Finished Right 25306 25306
  Method: Genomic_canonical