WormBase Tree Display for CDS: F32D8.11
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| F32D8.11 | SMap | S_parent | Sequence | F32D8 | |
|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 73 | ||
| 125 | 255 | ||||
| DB_info | Database | TrEMBL | UniProtAcc | D0VWN9 | |
| UniProt | UniProtAcc | D0VWN9 | |||
| UniProt_GCRP | UniProtAcc | D0VWN9 | |||
| AlphaFold | entry | D0VWN9 | |||
| NCBI_protein | GI_number | GI:262225512 | |||
| Protein_id | CHROMOSOME_V | CBH29659 | 1 | ||
| Origin | From_laboratory | HX | |||
| Species | Caenorhabditis elegans | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Confirmed | ||||
| Visible | Gene | WBGene00043302 | |||
| Corresponding_transcript | F32D8.11.1 | ||||
| F32D8.11.2 | |||||
| F32D8.11.3 | |||||
| Corresponding_protein | CE23697 | ||||
| Corresponding_PCR_product | cenix:231-a2 | ||||
| mv_F32D8.11a | |||||
| sjj_F32D8.3 | |||||
| Corresponding_oligo_set | 172581_s_at | ||||
| A_12_P100169 | |||||
| A_12_P117391 | |||||
| A_12_P135945 | |||||
| A_12_P135946 | |||||
| GPL19516_CGZ0011347 | |||||
| GPL19516_CGZ0019315 | |||||
| GPL21109_Cat_F32D8.12b.1 | |||||
| GPL21109_F32D8.11.1 | |||||
| GPL3518_CE23696 | |||||
| Matching_cDNA (16) | |||||
| RNAi_result | WBRNAi00046133 | ||||
| WBRNAi00014219 | |||||
| WBRNAi00031680 | |||||
| WBRNAi00089066 | |||||
| Microarray_results (11) | |||||
| RNASeq_FPKM (74) | |||||
| Last_reviewed | 09 Oct 2014 00:00:00 | WBPerson4025 | |||
| Remark | [ms2 990812] splice variant of .11a, based on EST data | ||||
| [091009 pad] Resurrected as this appears to be part of a complexed loci where the main gene product F32D8.12 is transcribed with a large 3' UTR which appears to contain a 2 exon gene with a very high scoring signal peptide and a likely cleavage site between amino acids 19 and 20. | Curator_confirmed | WBPerson1983 | |||
| From_analysis | SignalP_3.0 | ||||
| [031103 pad] Retired gene misprediction as belongs to 3' UTR of F32D8.12 | Curator_confirmed | WBPerson1983 | |||
| [141009 gw3] Took a look at this. The only evidence for this gene is the SignalP sequence and the protein coding hexon score. There is a hint that it might be translated from the ribosome binding track which has a signal just upstream of this CDS. It is still regarded as a dubious gene, but we are keeping it until more evidence for or against appears. | Curator_confirmed | WBPerson4025 | |||
| Method | curated |
