WormBase Tree Display for CDS: F25F2.2
expand all nodes | collapse all nodes | view schema
| F25F2.2 | SMap | S_parent | Sequence | CHROMOSOME_III | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (21) | |||||
| DB_info | Database | SwissProt | UniProtAcc | Q19319 | ||
| UniProt | UniProtAcc | Q19319 | ||||
| UniProt_GCRP | UniProtAcc | Q19319 | ||||
| AlphaFold | entry | Q19319 | ||||
| NCBI_protein | GI_number | GI:1047832493 | ||||
| Protein_id | CHROMOSOME_III | SBV53364 | 1 | |||
| DB_remark | CDH-4 protein; contains similarity to Pfam domains PF00008 (EGF-like domain), PF00028 (Cadherin domain), PF00054 (Laminin G domain); contains similarity to Interpro domains IPR013320 (Concanavalin A-like lectin/glucanase domain superfamily), IPR001881 (EGF-like calcium-binding domain), IPR038765 (Papain-like cysteine peptidase superfamily), IPR002126 (Cadherin-like), IPR000742 (EGF-like domain), IPR001791 (Laminin G domain), IPR015919 (Cadherin-like superfamily) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Artificial_intron | Low_quality_sequence | |||||
| Visible | Gene | WBGene00000396 | ||||
| Corresponding_transcript | F25F2.2.1 | |||||
| Corresponding_protein | CE51760 | |||||
| Corresponding_PCR_product | TH:301A2 | |||||
| cenix:301-a2 | ||||||
| mv_F25F2.2 | ||||||
| sjj_F25F2.2 | ||||||
| Corresponding_oligo_set (14) | ||||||
| Matching_cDNA (49) | ||||||
| RNAi_result | WBRNAi00107683 | |||||
| WBRNAi00087905 | ||||||
| WBRNAi00091981 | ||||||
| WBRNAi00091983 | ||||||
| WBRNAi00091982 | ||||||
| WBRNAi00091980 | ||||||
| WBRNAi00066038 | ||||||
| WBRNAi00045516 | ||||||
| WBRNAi00013880 | ||||||
| WBRNAi00005086 | ||||||
| Microarray_results (14) | ||||||
| Brief_identification | Cadherin-4 | Accession_evidence | UniProt | SP:Q19319 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 20 Feb 2017 15:35:04 | WBPerson1983 | ||||
| Remark | Prosite: match PS00232 Cadherin extracellular repeated domain signature x5 | |||||
| Prosite: match PS00017 ATP/GTP-binding site motif A (P-loop) | ||||||
| Prosite: match PS00022 EGF-like domain cysteine pattern signature x4 | ||||||
| [081016 pad] Intron 13 has a number of problems so it may be the case that there is a frameshift in this region indicating that this as a pseudogene? This should be take into consideration when working with this gene. | Curator_confirmed | WBPerson1983 | ||||
| [160609 pad] Added 2 single bp micro introns to correct the frame and generate the correct peptide sequence for this gene. Removed the secondary isoform as the novel coding sequence has been absorbed by the annotation update. | Curator_confirmed | WBPerson1983 | ||||
| Method | curated |
