WormBase Tree Display for CDS: F17E5.1a
expand all nodes | collapse all nodes | view schema
| F17E5.1a | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F17E5 | |||
| Structure | Source_exons (24) | |||||
| DB_info | Database | SwissProt | UniProtAcc | P54936 | ||
| UniProtIsoformAcc | P54936-1 | |||||
| UniProt | UniProtAcc | P54936 | ||||
| UniProt_GCRP | UniProtAcc | P54936 | ||||
| AlphaFold | entry | P54936 | ||||
| NCBI_protein | GI_number | GI:13548307 | ||||
| Protein_id | CHROMOSOME_X | CAA90760 | 2 | |||
| DB_remark | LIN-2 protein; contains similarity to Pfam domains PF00018 (SH3 domain), PF00069 (Protein kinase domain), PF00595 (PDZ domain), PF00625 (Guanylate kinase), PF02828 (L27 domain); contains similarity to Interpro domains IPR008145 (Guanylate kinase/L-type calcium channel beta subunit), IPR011009 (Protein kinase-like domain superfamily), IPR036028 (SH3-like domain superfamily), IPR027417 (P-loop containing nucleoside triphosphate hydrolase), IPR001478 (PDZ domain), IPR036034 (PDZ superfamily), IPR014775 (L27 domain, C-terminal), IPR001452 (SH3 domain), IPR000719 (Protein kinase domain), IPR020635 (Tyrosine-protein kinase, catalytic domain), IPR004172 (L27 domain) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Accession_evidence | NDB | CB395393 | |||
| Inferred_automatically | transcript_builder | |||||
| Visible | Gene | WBGene00002991 | ||||
| Corresponding_transcript | F17E5.1a.1 | |||||
| Corresponding_protein | CE27131 | |||||
| Corresponding_PCR_product | cenix:147-c4 | |||||
| mv_CAA63314 | ||||||
| mv_CAA63315 | ||||||
| sjj_F17E5.1 | ||||||
| Corresponding_oligo_set (17) | ||||||
| Matching_cDNA (20) | ||||||
| RNAi_result | WBRNAi00013468 | |||||
| WBRNAi00030265 | ||||||
| WBRNAi00044888 | ||||||
| WBRNAi00000540 | ||||||
| WBRNAi00076312 | ||||||
| Microarray_results (21) | ||||||
| Brief_identification | Protein lin-2 | Accession_evidence | UniProt | SP:P54936 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 31 Mar 2001 00:00:00 | WBPerson1846 | ||||
| Remark | 951117: Splice sites for exon 16 - 17 utilise the rare GC..AG intron type | |||||
| Annotated using Pfam | ||||||
| [010330 dl] Modified prediction based on mRNA X92564 | Curator_confirmed | WBPerson1846 | ||||
| Method | curated |
