WormBase Tree Display for CDS: F13D2.1b
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| F13D2.1b | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_X | |||
| Structure | Source_exons (37) | |||||
| DB_info | Database | TrEMBL | UniProtAcc | K8F7Z5 | ||
| UniProt | UniProtAcc | K8F7Z5 | ||||
| UniProt_GCRP | UniProtAcc | K8F7Z5 | ||||
| AlphaFold | entry | K8F7Z5 | ||||
| NCBI_protein | GI_number | GI:423092763 | ||||
| Protein_id | CHROMOSOME_X | CCO25855 | 1 | |||
| DB_remark | contains similarity to Interpro domain IPR001599 (Alpha-2-macroglobulin) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | From_analysis | RNASeq_Hillier_elegans | ||||
| Visible | Gene | WBGene00008735 | ||||
| Corresponding_transcript | F13D2.1b.1 | |||||
| Corresponding_protein | CE47830 | |||||
| Corresponding_PCR_product | cenix:35-f9 | |||||
| cenix:71-e11 | ||||||
| mv_F13D2.1 | ||||||
| mv_F13D2.4 | ||||||
| sjj_F13D2.1 | ||||||
| sjj_F13D2.4 | ||||||
| smd_F13D2.1 | ||||||
| Corresponding_oligo_set (31) | ||||||
| Matching_cDNA (14) | ||||||
| RNAi_result | WBRNAi00070834 | |||||
| WBRNAi00044508 | ||||||
| WBRNAi00070835 | ||||||
| WBRNAi00013222 | ||||||
| WBRNAi00013220 | ||||||
| WBRNAi00030888 | ||||||
| WBRNAi00030891 | ||||||
| WBRNAi00044511 | ||||||
| Microarray_results (34) | ||||||
| Brief_identification | Alpha-2-macroglobulin domain-containing protein | Accession_evidence | UniProt | TR:K8F7Z5 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 25 Apr 2019 14:17:50 | WBPerson4025 | ||||
| Remark | [120905 pad] Merged F13D2.1 and F13D2.4 based on RNASeq splice data. This isoform differs in exon splicing by a modular 3 difference in exon 17. | Curator_confirmed | WBPerson1983 | |||
| From_analysis | RNASeq_Hillier_elegans | |||||
| [190425 gw3] This CDS has been inspected and looks satisfactory. | Curator_confirmed | WBPerson4025 | ||||
| From_analysis | RNASeq | |||||
| Method | curated |
