WormBase Tree Display for CDS: F02A9.6
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F02A9.6 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | CHROMOSOME_III | |||
Structure | Source_exons | 1 | 140 | |||
1001 | 1116 | |||||
1757 | 1819 | |||||
2339 | 3247 | |||||
3548 | 3788 | |||||
4094 | 4829 | |||||
5237 | 5709 | |||||
5760 | 6843 | |||||
6895 | 7020 | |||||
DB_info | Database | SwissProt | UniProtAcc | P13508 | ||
UniProt | UniProtAcc | P13508 | ||||
UniProt_GCRP | UniProtAcc | P13508 | ||||
AlphaFold | entry | P13508 | ||||
NCBI_protein | GI_number | GI:3875450 | ||||
TREEFAM | TREEFAM_ID | TF351641 | ||||
Protein_id | CHROMOSOME_III | CAA79620 | 1 | |||
DB_remark | GLP-1 protein; contains similarity to Pfam domains PF00008 (EGF-like domain), PF00023 (Ankyrin repeat), PF00066 (LNR domain), PF06816 (NOTCH protein), PF07684 (NOTCH protein), PF12796 (Ankyrin repeats (3 copies)); contains similarity to Interpro domains IPR011656 (Notch, NODP domain), IPR002110 (Ankyrin repeat), IPR001881 (EGF-like calcium-binding domain), IPR000800 (Notch domain), IPR035993 (Notch-like domain superfamily), IPR000742 (EGF-like domain), IPR036770 (Ankyrin repeat-containing domain superfamily), IPR010660 (Notch, NOD domain) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00001609 | ||||
Corresponding_transcript | F02A9.6.1 | |||||
Corresponding_protein | CE00237 | |||||
Corresponding_PCR_product | TH:320A6 | |||||
TH:335D6 | ||||||
cenix:320-a6 | ||||||
cenix:335-d6 | ||||||
mv_AAA28058 | ||||||
sjj_F02A9.6 | ||||||
Corresponding_oligo_set (17) | ||||||
Matching_cDNA (48) | ||||||
RNAi_result (61) | ||||||
Microarray_results (18) | ||||||
Brief_identification | glp-1/Notch intracellular domain | Accession_evidence | UniProt | SP:P13508 | ||
RNASeq_FPKM (74) | ||||||
Associated_feature | WBsf027615 | |||||
Method | curated |