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WormBase Tree Display for CDS: CJA19125

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Name Class

CJA19125SMapS_parentSequenceCjap.Contig18257
StructureSource_exons (16)
DB_infoDatabaseTREEFAMTREEFAM_IDTF316477
DB_remarkCJP-UNC-22.1 protein; contains similarity to Pfam domains PF00041 (Fibronectin type III domain), PF00069 (Protein kinase domain), PF07679 (Immunoglobulin I-set domain); contains similarity to Interpro domains IPR003598 (Immunoglobulin subtype 2), IPR003961 (Fibronectin type III), IPR013098 (Immunoglobulin I-set), IPR011009 (Protein kinase-like domain superfamily), IPR013783 (Immunoglobulin-like fold), IPR000719 (Protein kinase domain), IPR036179 (Immunoglobulin-like domain superfamily), IPR003599 (Immunoglobulin subtype), IPR036116 (Fibronectin type III superfamily)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00138327
Corresponding_transcriptCJA19125.1
Corresponding_proteinJA67392
Corresponding_oligo_setGPL14145_CJA10955_1325-1384_0.911_1_C
GPL14145_CJA10955_1399-1458_0.625_127_A
GPL14145_CJA10955_1402-1461_0.622_129_B
GPL14145_CJA19125_17071-17130_0.838_41_B
GPL14145_CJA19125_17077-17136_0.843_33_A
GPL14145_CJA19125_17658-17717_0.945_2_C
Matching_cDNAjaponica_GG7816|c6_g1_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA10955_1325-1384_0.911_1_C
GPL14145_CJA10955_1399-1458_0.625_127_A
GPL14145_CJA10955_1402-1461_0.622_129_B
GPL14145_CJA19125_17071-17130_0.838_41_B
GPL14145_CJA19125_17077-17136_0.843_33_A
GPL14145_CJA19125_17658-17717_0.945_2_C
RNASeq_FPKMWBls:000000411.5136From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002726.7852From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003848.6516From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
51.1959From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004116.0597From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
21.1654From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
3.54622From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
5.11483From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
5.73638From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
7.03646From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
7.68937From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
8.40335From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
Remarkbased on Augustus prediction Cjap.Contig18257.g29544.t1[100726 mh6]
Methodcurated