WormBase Tree Display for CDS: CJA19125
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| CJA19125 | SMap | S_parent | Sequence | Cjap.Contig18257 | |
|---|---|---|---|---|---|
| Structure | Source_exons (16) | ||||
| DB_info | Database | TREEFAM | TREEFAM_ID | TF316477 | |
| DB_remark | CJP-UNC-22.1 protein; contains similarity to Pfam domains PF00041 (Fibronectin type III domain), PF00069 (Protein kinase domain), PF07679 (Immunoglobulin I-set domain); contains similarity to Interpro domains IPR003598 (Immunoglobulin subtype 2), IPR003961 (Fibronectin type III), IPR013098 (Immunoglobulin I-set), IPR011009 (Protein kinase-like domain superfamily), IPR013783 (Immunoglobulin-like fold), IPR000719 (Protein kinase domain), IPR036179 (Immunoglobulin-like domain superfamily), IPR003599 (Immunoglobulin subtype), IPR036116 (Fibronectin type III superfamily) | ||||
| Origin | From_laboratory | RW | |||
| Species | Caenorhabditis japonica | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Confirmed | ||||
| Visible | Gene | WBGene00138327 | |||
| Corresponding_transcript | CJA19125.1 | ||||
| Corresponding_protein | JA67392 | ||||
| Corresponding_oligo_set | GPL14145_CJA10955_1325-1384_0.911_1_C | ||||
| GPL14145_CJA10955_1399-1458_0.625_127_A | |||||
| GPL14145_CJA10955_1402-1461_0.622_129_B | |||||
| GPL14145_CJA19125_17071-17130_0.838_41_B | |||||
| GPL14145_CJA19125_17077-17136_0.843_33_A | |||||
| GPL14145_CJA19125_17658-17717_0.945_2_C | |||||
| Matching_cDNA | japonica_GG7816|c6_g1_i1 | Inferred_automatically | transcript_builder.pl | ||
| Microarray_results | GPL14145_CJA10955_1325-1384_0.911_1_C | ||||
| GPL14145_CJA10955_1399-1458_0.625_127_A | |||||
| GPL14145_CJA10955_1402-1461_0.622_129_B | |||||
| GPL14145_CJA19125_17071-17130_0.838_41_B | |||||
| GPL14145_CJA19125_17077-17136_0.843_33_A | |||||
| GPL14145_CJA19125_17658-17717_0.945_2_C | |||||
| RNASeq_FPKM (4) | |||||
| Remark | based on Augustus prediction Cjap.Contig18257.g29544.t1[100726 mh6] | ||||
| Method | curated |
