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WormBase Tree Display for CDS: CJA10254

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Name Class

CJA10254EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCjap.Contig16436
StructureSource_exons1166
9491074
11521257
15171598
DB_infoDatabaseTREEFAMTREEFAM_IDTF314474
DB_remarkCJP-PDL-1 protein; contains similarity to Pfam domain PF05351 (GMP-PDE, delta subunit); contains similarity to Interpro domains IPR014756 (Immunoglobulin E-set), IPR017287 (Retinal rod rhodopsin-sensitive cGMP 3', 5'-cyclic phosphodiesterase, delta subunit), IPR037036 (GMP phosphodiesterase, delta subunit superfamily), IPR008015 (GMP phosphodiesterase, delta subunit)
OriginFrom_laboratoryRW
SpeciesCaenorhabditis japonica
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00129458
Corresponding_transcriptCJA10254.1
Corresponding_proteinJA16874
Corresponding_oligo_setGPL14145_CJA10254_21-80_0.887_20_B
GPL14145_CJA10254_85-144_0.923_2_C
GPL14145_CJA10254_171-230_0.918_4_A
Matching_cDNAjaponica_GG18602|c0_g1_i1Inferred_automaticallytranscript_builder.pl
japonica_GG18602|c0_g2_i1Inferred_automaticallytranscript_builder.pl
Microarray_resultsGPL14145_CJA10254_171-230_0.918_4_A
GPL14145_CJA10254_21-80_0.887_20_B
GPL14145_CJA10254_85-144_0.923_2_C
RNASeq_FPKMWBls:000000429.0798From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:000002741.7481From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:000003826.401From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
26.7797From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:00000411.999From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
2.1193From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
2.60929From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
2.72688From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
4.72292From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
6.33619From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
6.97292From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
7.28954From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
Remarkbased on Augustus prediction Cjap.Contig16436.g11494.t1[100726 mh6]
Methodcurated