WormBase Tree Display for CDS: CBG17885
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| CBG17885 | SMap | S_parent | Sequence | cb25.fpc4077 | |
|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 5 | ||
| 3224 | 3606 | ||||
| 4991 | 5087 | ||||
| 5770 | 6399 | ||||
| 6468 | 6626 | ||||
| 7111 | 7243 | ||||
| DB_info | Database | UniProt | UniProtAcc | A8XS08 | |
| UniProtId | A8XS08_CAEBR | ||||
| TrEMBL | UniProtAcc | A8XS08 | |||
| UniProt_GCRP | UniProtAcc | A8XS08 | |||
| TREEFAM | TREEFAM_ID | TF321411 | |||
| Protein_id | cb25.fpc4077 | CAP35427 | 1 | ||
| DB_remark | CBR-UNC-34 protein; contains similarity to Pfam domain PF00568 (WH1 domain); contains similarity to Interpro domains IPR011993 (PH-like domain superfamily), IPR000697 (WH1/EVH1 domain) | ||||
| Origin | From_laboratory | CB | |||
| Species | Caenorhabditis briggsae | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Confirmed | ||||
| Visible | Gene | WBGene00037397 | |||
| Corresponding_transcript | CBG17885.1 | ||||
| Corresponding_protein | CBP39340 | ||||
| Corresponding_oligo_set | GPL8303_CB6_WBGene00037397_A | ||||
| GPL8303_CB6_WBGene00037397_B | |||||
| GPL14143_CBG17885_905-964_0.884_13_B | |||||
| GPL14143_CBG17885_1031-1090_0.933_1_A | |||||
| GPL14143_CBG17885_1285-1344_0.915_5_C | |||||
| Matching_cDNA | briggsae_GG1773|c0_g3_i1 | Inferred_automatically | transcript_builder.pl | ||
| briggsae_GG1773|c0_g4_i2 | Inferred_automatically | transcript_builder.pl | |||
| briggsae_GG1773|c0_g1_i1 | Inferred_automatically | transcript_builder.pl | |||
| briggsae_GG1773|c0_g2_i1 | Inferred_automatically | transcript_builder.pl | |||
| Microarray_results | GPL8303_CB6_WBGene00037397_A | ||||
| GPL8303_CB6_WBGene00037397_B | |||||
| GPL14143_CBG17885_905-964_0.884_13_B | |||||
| GPL14143_CBG17885_1031-1090_0.933_1_A | |||||
| GPL14143_CBG17885_1285-1344_0.915_5_C | |||||
| RNASeq_FPKM (9) | |||||
| Last_reviewed | 31 Aug 2016 10:21:23 | WBPerson4025 | |||
| Remark | [gffnote] orthologous to Y50D4C.1 by best mutual match (eval=4e-37) ; Ortholog Y50D4C.1 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP10717 ; Gene WBGene00037397 | ||||
| [20080722 tb] Modified based on Jigsaw gene ContigchrV_random.briggsae.jigsaw.489 | |||||
| [160826 gw3] This CDS has been updated by using the Trinity model 'briggsae_GG1773|c0_g2_i1-chrV-1b.extended'. | Curator_confirmed | WBPerson4025 | |||
| Method | curated |
