WormBase Tree Display for CDS: CBG14917a
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CBG14917a | SMap | S_parent | Sequence | cb25.fpc3857b | |
---|---|---|---|---|---|
Structure | Source_exons (14) | ||||
DB_info | Database | UniProt | UniProtAcc | A8XKZ7 | |
UniProtId | A8XKZ7_CAEBR | ||||
DB_remark | CBR-UNC-40 protein; contains similarity to Pfam domains PF00041 (Fibronectin type III domain), PF07679 (Immunoglobulin I-set domain), PF13927 (Immunoglobulin domain); contains similarity to Interpro domains IPR003598 (Immunoglobulin subtype 2), IPR003961 (Fibronectin type III), IPR013098 (Immunoglobulin I-set), IPR013783 (Immunoglobulin-like fold), IPR036179 (Immunoglobulin-like domain superfamily), IPR003599 (Immunoglobulin subtype), IPR036116 (Fibronectin type III superfamily) | ||||
Origin | From_laboratory | CB | |||
Species | Caenorhabditis briggsae | ||||
Properties | Coding | CDS | |||
Prediction_status | Confirmed | ||||
Isoform | Curator_confirmed | WBPerson4025 | |||
Visible | Gene | WBGene00035291 | |||
Corresponding_transcript | CBG14917a.1 | ||||
Corresponding_protein | CBP45241 | ||||
Corresponding_oligo_set | GPL8303_CB6_WBGene00035291_A | ||||
GPL8303_CB6_WBGene00035291_B | |||||
GPL14143_CBG14917_1940-1999_0.789_110_B | |||||
GPL14143_CBG14917_2902-2961_0.844_41_A | |||||
GPL14143_CBG14917_3796-3855_0.598_535_C | |||||
Microarray_results | GPL8303_CB6_WBGene00035291_A | ||||
GPL8303_CB6_WBGene00035291_B | |||||
GPL14143_CBG14917_1940-1999_0.789_110_B | |||||
GPL14143_CBG14917_2902-2961_0.844_41_A | |||||
GPL14143_CBG14917_3796-3855_0.598_535_C | |||||
RNASeq_FPKM (9) | |||||
Last_reviewed | 31 Aug 2016 10:21:14 | WBPerson4025 | |||
Remark | [gffnote] orthologous to T19B4.7 by best mutual match (eval=0) ; Ortholog T19B4.7 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP03421 ; Gene WBGene00035291 | ||||
[20080722 tb] Modified based on Jigsaw gene ContigchrI.briggsae.jigsaw.471 | |||||
[160826 gw3] This CDS has been updated by using the Trinity model 'briggsae_GG3893|c32_g1_i1-chrI-1b'. | Curator_confirmed | WBPerson4025 | |||
Method | curated |