WormBase Tree Display for CDS: CBG12070d
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| CBG12070d | SMap | S_parent | Sequence | cb25.fpc2852 | |
|---|---|---|---|---|---|
| Structure | Source_exons (33) | ||||
| DB_info | DB_remark | CBR-UNC-89 protein; contains similarity to Pfam domains PF00041 (Fibronectin type III domain), PF00621 (RhoGEF domain), PF05177 (RCSD region), PF07679 (Immunoglobulin I-set domain); contains similarity to Interpro domains IPR003598 (Immunoglobulin subtype 2), IPR003961 (Fibronectin type III), IPR000219 (Dbl homology (DH) domain), IPR013098 (Immunoglobulin I-set), IPR035899 (Dbl homology (DH) domain superfamily), IPR001849 (Pleckstrin homology domain), IPR001452 (SH3 domain), IPR013783 (Immunoglobulin-like fold), IPR011993 (PH-like domain superfamily), IPR013106 (Immunoglobulin V-set domain), IPR036179 (Immunoglobulin-like domain superfamily), IPR036028 (SH3-like domain superfamily), IPR003599 (Immunoglobulin subtype), IPR036116 (Fibronectin type III superfamily), IPR007850 (RCSD) | |||
| Origin | From_laboratory | HX | |||
| Species | Caenorhabditis briggsae | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Partially_confirmed | ||||
| Isoform | Curator_confirmed | WBPerson4025 | |||
| Artificial_intron | Low_quality_sequence | ||||
| Visible | Gene | WBGene00033078 | |||
| Corresponding_transcript | CBG12070d.1 | ||||
| Corresponding_protein | CBP48656 | ||||
| Corresponding_oligo_set | GPL8303_CB6_WBGene00033078_A | ||||
| GPL14143_CBG12070_18430-18489_0.828_105_C | |||||
| GPL14143_CBG12070_19338-19397_0.944_1_B | |||||
| GPL14143_CBG12070_19394-19453_0.908_24_A | |||||
| Microarray_results | GPL8303_CB6_WBGene00033078_A | ||||
| GPL14143_CBG12070_18430-18489_0.828_105_C | |||||
| GPL14143_CBG12070_19338-19397_0.944_1_B | |||||
| GPL14143_CBG12070_19394-19453_0.908_24_A | |||||
| RNASeq_FPKM (9) | |||||
| Last_reviewed | 14 Dec 2017 15:42:25 | WBPerson4025 | |||
| Remark | [171214 gw3] This structure has been created based on the RNASeq data. | Curator_confirmed | WBPerson4025 | ||
| From_analysis | RNASeq | ||||
| [171214 gw3] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson4025 | |||
| From_analysis | RNASeq | ||||
| Method | curated |
