CBG12070a | SMap | S_parent | Sequence | cb25.fpc2852 |
| Structure | Source_exons (34) |
| DB_info | Database | UniProt | UniProtAcc | A8XEH5 |
| | | | UniProtId | A8XEH5_CAEBR |
| | DB_remark | CBR-UNC-89 protein; contains similarity to Pfam domains PF00041 (Fibronectin type III domain), PF00621 (RhoGEF domain), PF05177 (RCSD region), PF07679 (Immunoglobulin I-set domain); contains similarity to Interpro domains IPR003598 (Immunoglobulin subtype 2), IPR003961 (Fibronectin type III), IPR000219 (Dbl homology (DH) domain), IPR013098 (Immunoglobulin I-set), IPR035899 (Dbl homology (DH) domain superfamily), IPR001849 (Pleckstrin homology domain), IPR001452 (SH3 domain), IPR013783 (Immunoglobulin-like fold), IPR011993 (PH-like domain superfamily), IPR013106 (Immunoglobulin V-set domain), IPR036179 (Immunoglobulin-like domain superfamily), IPR036028 (SH3-like domain superfamily), IPR003599 (Immunoglobulin subtype), IPR036116 (Fibronectin type III superfamily), IPR007850 (RCSD) |
| Origin | From_laboratory | CB |
| | Species | Caenorhabditis briggsae |
| Properties | Coding | CDS |
| | | Prediction_status | Partially_confirmed |
| | Isoform | Curator_confirmed | WBPerson4025 |
| | Artificial_intron | Low_quality_sequence |
| Visible | Gene | WBGene00033078 |
| | Corresponding_transcript | CBG12070a.1 |
| | Corresponding_protein | CBP48680 |
| | Corresponding_oligo_set | GPL8303_CB6_WBGene00033078_A |
| | | GPL14143_CBG12070_18430-18489_0.828_105_C |
| | | GPL14143_CBG12070_19338-19397_0.944_1_B |
| | | GPL14143_CBG12070_19394-19453_0.908_24_A |
| | Matching_cDNA | briggsae_GG3925|c5_g4_i1 |
| | | briggsae_GG3925|c5_g1_i1 | Inferred_automatically | transcript_builder.pl |
| | | briggsae_GG3925|c5_g2_i3 | Inferred_automatically | transcript_builder.pl |
| | | briggsae_GG3925|c5_g5_i1 | Inferred_automatically | transcript_builder.pl |
| | | briggsae_GG3925|c4_g2_i1 | Inferred_automatically | transcript_builder.pl |
| | Microarray_results | GPL8303_CB6_WBGene00033078_A |
| | | GPL14143_CBG12070_18430-18489_0.828_105_C |
| | | GPL14143_CBG12070_19338-19397_0.944_1_B |
| | | GPL14143_CBG12070_19394-19453_0.908_24_A |
| | RNASeq_FPKM | WBls:0000002 | 0.04561 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717 |
| | | | 0.129217 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718 |
| | | | 0.349169 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749 |
| | | | 1.88046 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351 |
| | | WBls:0000003 | 1.2e-05 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708 |
| | | | 0 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706 |
| | | | | | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707 |
| | | WBls:0000004 | 0.000639 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069 |
| | | | 0.278385 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655 |
| | | | 0.496779 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656 |
| | | | 0.512001 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070 |
| | | | 2.46175 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087 |
| | | WBls:0000024 | 0.279279 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711 |
| | | | 0.287856 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709 |
| | | | 0.299266 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710 |
| | | | 0.577015 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748 |
| | | | 10.6478 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790 |
| | | | 11.6226 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789 |
| | | | 11.6927 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788 |
| | | | 15.7105 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786 |
| | | | 16.6138 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787 |
| | | | 7.40166 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791 |
| | | WBls:0000027 | 0.334151 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712 |
| | | | 0.496884 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666 |
| | | | 1.53724 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079 |
| | | | 26.7802 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088 |
| | | WBls:0000035 | 0.223982 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713 |
| | | WBls:0000038 | 0.062773 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714 |
| | | | 0.133507 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715 |
| | | | 14.0691 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089 |
| | | | 3.22522 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081 |
| | | WBls:0000041 | 0.447391 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957 |
| | | | 2.02954 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956 |
| | | | 2.08632 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954 |
| | | | 2.54567 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953 |
| | | | 4.00124 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955 |
| | | | 4.00515 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958 |
| | | WBls:0000063 | 0.11156 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716 |
| | | | 12.5649 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086 |
| | | | 4.26378 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668 |
| | | | 4.39517 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120 |
| | | | 5.26519 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667 |
| | | | 6.86626 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119 |
| | Last_reviewed | 14 Dec 2017 15:40:47 | WBPerson4025 |
| | Remark | [gffnote] orthologous to C09D1.1 by best mutual match (eval=0) ; Ortholog C09D1.1 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP02940 ; Gene WBGene00033078 |
| | | [171214 gw3] Merged CBG12070, CBG26591 and CBG12069 based on the RNASeq data. | Curator_confirmed | WBPerson4025 |
| | | | From_analysis | RNASeq |
| | | [171214 gw3] This CDS has been updated based on the RNAseq data. | Curator_confirmed | WBPerson4025 |
| | | | From_analysis | RNASeq |
| Method | curated |