WormBase Tree Display for CDS: C55B7.4a
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| C55B7.4a | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| Feature_evidence | WBsf949221 | |||||
| SMap | S_parent | Sequence | C55B7 | |||
| Structure | Source_exons | 1 | 175 | |||
| 222 | 322 | |||||
| 630 | 1073 | |||||
| 1123 | 1219 | |||||
| 1265 | 1410 | |||||
| 1457 | 1594 | |||||
| 1830 | 2012 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | H2KZG6 | ||
| UniProt | UniProtAcc | H2KZG6 | ||||
| UniProt_GCRP | UniProtAcc | H2KZG6 | ||||
| AlphaFold | entry | H2KZG6 | ||||
| NCBI_protein | GI_number | GI:351060422 | ||||
| TREEFAM | TREEFAM_ID | TF105055 | ||||
| Protein_id | CHROMOSOME_I | CCD68091 | 1 | |||
| DB_remark | ACDH-1 protein; contains similarity to Pfam domains PF00441 (Acyl-CoA dehydrogenase, C-terminal domain), PF02770 (Acyl-CoA dehydrogenase, middle domain), PF02771 (Acyl-CoA dehydrogenase, N-terminal domain); contains similarity to Interpro domains IPR013786 (Acyl-CoA dehydrogenase/oxidase, N-terminal), IPR006091 (Acyl-CoA oxidase/dehydrogenase, middle domain), IPR036250 (Acyl-CoA dehydrogenase-like, C-terminal), IPR037069 (Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily), IPR046373 (Acyl-CoA oxidase/dehydrogenase, middle domain superfamily), IPR009100 (Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily), IPR009075 (Acyl-CoA dehydrogenase/oxidase, C-terminal) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Accession_evidence | EMBL | BJ776343 | |||
| Visible | Gene | WBGene00016943 | ||||
| Corresponding_transcript | C55B7.4a.1 | |||||
| Corresponding_protein | CE09015 | |||||
| Corresponding_PCR_product | cenix:71-c7 | |||||
| mv_C55B7.4 | ||||||
| sjj_C55B7.4 | ||||||
| Corresponding_oligo_set (26) | ||||||
| Matching_cDNA (314) | ||||||
| RNAi_result (14) | ||||||
| Microarray_results | SMD_C55B7.4 | |||||
| 188822_at | ||||||
| A_12_P109574 | ||||||
| A_12_P137775 | ||||||
| A_12_P161873 | ||||||
| Aff_C55B7.4 | ||||||
| GPL13394_WBGene00016943 | ||||||
| GPL13914_C55B7.4 | ||||||
| GPL14144_C55B7.4a_1016-1075_0.938_1_A | ||||||
| GPL19516_CGZ0010707 | ||||||
| GPL19516_CGZ0010708 | ||||||
| GPL19516_CGZ0010709 | ||||||
| GPL19516_CGZ0010710 | ||||||
| GPL19516_CGZ0010711 | ||||||
| GPL19516_CGZ0010712 | ||||||
| GPL19516_CGZ0010713 | ||||||
| GPL21109_C55B7.4a | ||||||
| GPL21109_C55B7.4b.1 | ||||||
| GPL3518_CE09015 | ||||||
| GPL8304_CE_WBGene00016943_A | ||||||
| GPL8304_CE_WBGene00016943_C | ||||||
| GPL8673_C55B7_4aP00033 | ||||||
| GPL8673_C55B7_4aP00239 | ||||||
| GPL8673_C55B7_4aP00987 | ||||||
| GPL8673_C55B7_4bP00106 | ||||||
| GPL8673_C55B7_4bP00171 | ||||||
| GPL8673_C55B7_4bP00549 | ||||||
| GPL9450_C55B7.4a | ||||||
| GPL9450_C55B7.4a_162 | ||||||
| GPL9450_C55B7.4b | ||||||
| cea2.c.01678 | ||||||
| cea2.d.01807 | ||||||
| Brief_identification | Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial | Accession_evidence | UniProt | TR:H2KZG6 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
