WormBase Tree Display for Sequence: C32A3

C32A3 DNA: C32A3 45514
  SMap: S_child: Gene_child: WBGene00004765 30382 16191
        WBGene00007859 33612 30474
        WBGene00196381 40567 40706
        WBGene00202440 24760 24884
        WBGene00195294 9942 9794
        WBGene00219563 39028 36245
        WBGene00201466 35695 35848
      CDS_child (149)
      Transcript: C32A3.4 9942 9794
        C32A3.5 40567 40706
        C32A3.6 35695 35848
        C32A3.7 24760 24884
        C32A3.8 39028 36245
        C32A3.1a.1 30382 16191
        C32A3.1b.1 21771 16458
        C32A3.2.1 33612 30474
        C48D5.2b.1 2376 15211
      Nongenomic: yk376d6 8074 15139
        [cgc4120]:C32A3.1a 30357 16456
      PCR_product (15)
      Allele (959)
      Oligo_set: Aff_C32A3.1 17646 16542
        Aff_C32A3.2 33212 31596
        Aff_C32A3.3 44501 45947
        Aff_C48D5.2 13111 14803
      Feature_object (410)
      Feature_data: C32A3:Polysome 1 45514
        C32A3:TranscriptionallyActiveRegion 1 45514
        C32A3:ChIPSeqTF 1 45514
        C32A3:TRF 1 45514
        C32A3:Dust 1 45514
        C32A3:inverted 1 45514
      Homol_data (19)
  Structure: From: Source: CHROMOSOME_III
    Overlap_right: C46F11 45413
    Overlap_left: C48D5
    Clone_left_end: C32A3 1
      C46F11 45413
    Clone_right_end: C48D5 4075
      C32A3 44664
  DB_info: Database: EMBL NDB_AC Z48241
        NDB_SV Z48241.2
    DB_remark: [121025] Sequence correction: SNP 0 bases @ 14459
      [121025] Sequence correction: SNP 0 bases @ 17090
      [121025] Sequence correction: SNP 0 bases @ 20013
      [121025] Sequence correction: SNP 0 bases @ 29129
      [121025] Sequence correction: SNP 0 bases @ 44732
      [121025] Sequence correction: SNP 0 bases @ 45145
      [121025] Sequence correction WBsf268181 : Insertion C1 bases from @ 3210
      [121025] Sequence correction WBsf267840 : Insertion T1 bases from @ 17015
      [121025] Sequence correction WBsf268199 : Insertion A1 bases from @ 28805
      [121025] Sequence correction WBsf268305 : Insertion G1 bases from @ 44206
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Thomas K
    From_laboratory: HX
    Date_directory: 941220
    Species: Caenorhabditis elegans
    Strain: WBStrain00000001
  Visible: Clone: C32A3
  Properties: Genomic_canonical
    Checksum: MD5: e9ef66edc7398fbce0b3fe7c25c6eb8b
    Status: Finished: 20 Dec 1994 00:00:00
      Submitted: 14 Feb 1995 00:00:00
      Annotated: 13 Feb 1995 00:00:00
  Map: Sequence-III Ends: Left: 1554
        Right: 1569
  Interpolated_map_position: III -5.16894
  Assembly_tags: annotation 1 4 beginning of C32A3
      4072 4075 end of C48D5
      14489 14535 doulbe-stranding failed with 4 different oligos. I have put a terminator across the other strand to check for compressions
      14586 14599 sequence messy due to run of Cs, but probably correct
      14602 14622 run of Gs, not double-sranded all the way aross. Number of Gs defined by Sequenase run terminators run on either side up to run of Gs
      14638 14734 region to right of Gs single-stranded only, but covered with terminators, so no suspected compressions have been found
      16098 16119 negative strand only, but terminated to check against compressions
      16075 16095 number of Gs unsure
      19256 19256 terminators on both strnds say 2 clear Cs non terminator reads call a T, but are less clear. I think CC is correct
      19797 19797 point mutation of A to T on single read
      22051 22076 not double-stranded through run of Cs, but terminators run to check for compressions
      27471 27478 one read has this sequence deleted, It is present in all other + and - reads.
      32378 32401 single-stranded, but with a terminator to confirm
      35584 35615 single-stranded, with terminators to solve potential compressions
      40416 40416 single read has point mutation of G to T
      45161 45161 T > A MUTATION IN PCR FRAGMENT
      45158 45407 single-stranded
        45164 ?difficult region from pcrs used 'best guess' sequence
      45409 45413 sequence from pcr fragment. Not 100% certain over these 5 bases used best call of terminators
      45413 45416 beginning of C46f11
    Clone right end 44661 44664 C32A3
  Method: Genomic_canonical