WormBase Tree Display for CDS: C08E3.9
expand all nodes | collapse all nodes | view schema
| C08E3.9 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C08E3 | |||
| Structure | Source_exons | 1 | 197 | |||
| 432 | 524 | |||||
| 1153 | 1810 | |||||
| 1863 | 2066 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | O17200 | ||
| UniProt | UniProtAcc | O17200 | ||||
| UniProt_GCRP | UniProtAcc | O17200 | ||||
| AlphaFold | entry | O17200 | ||||
| NCBI_protein | GI_number | GI:351021382 | ||||
| TREEFAM | TREEFAM_ID | TF321294 | ||||
| Protein_id | CHROMOSOME_II | CCD63673 | 1 | |||
| DB_remark | FBXA-166 protein; contains similarity to Pfam domains PF01827 (FTH domain), PF17906 (HTH domain in Mos1 transposase); contains similarity to Interpro domains IPR002900 (Domain of unknown function DUF38/FTH, Caenorhabditis species), IPR041426 (Mos1 transposase, HTH domain), IPR040161 (F-box A protein FB224) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00015601 | ||||
| Corresponding_transcript | C08E3.9.1 | |||||
| Corresponding_protein | CE39129 | |||||
| Corresponding_PCR_product | cenix:202-g11 | |||||
| mv_C08E3.9 | ||||||
| sjj2_C08E3.9 | ||||||
| sjj_C08E3.9 | ||||||
| Corresponding_oligo_set (12) | ||||||
| Matching_cDNA (21) | ||||||
| RNAi_result | WBRNAi00028675 | |||||
| WBRNAi00010453 | ||||||
| WBRNAi00040099 | ||||||
| Microarray_results (13) | ||||||
| Brief_identification | F-box domain-containing protein | Accession_evidence | UniProt | TR:O17200 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 29 Sep 2005 00:00:00 | WBPerson1867 | ||||
| Remark | [20050929 po] removed 3' exon based on OST data(OSTR107A10_1) | Curator_confirmed | WBPerson1867 | |||
| Method | curated |
