WormBase Tree Display for CDS: B0024.8a
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| B0024.8a | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | B0024 | |||
| Structure | Source_exons (23) | |||||
| DB_info | Database | SwissProt | UniProtAcc | Q17423 | ||
| UniProtIsoformAcc | Q17423-1 | |||||
| UniProt | UniProtAcc | Q17423 | ||||
| UniProt_GCRP | UniProtAcc | Q17423 | ||||
| AlphaFold | entry | Q17423 | ||||
| NCBI_protein | GI_number | GI:194686297 | ||||
| TREEFAM | TREEFAM_ID | TF315518 | ||||
| Protein_id | CHROMOSOME_V | CAA94880 | 3 | |||
| DB_remark | CHE-12 protein; contains similarity to Pfam domains PF12348 (CLASP N terminal), PF21040 (Centrosomal protein CEP104-like, TOG domain); contains similarity to Interpro domains IPR034085 (TOG domain), IPR011989 (Armadillo-like helical), IPR024395 (CLASP N-terminal domain), IPR016024 (Armadillo-type fold) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Protein_id_evidence | RP:RP38528 | ||||
| Visible | Gene | WBGene00000491 | ||||
| Corresponding_transcript | B0024.8a.1 | |||||
| Corresponding_protein | CE42903 | |||||
| Corresponding_PCR_product | cenix:46-c6 | |||||
| cenix:47-b3 | ||||||
| mv_B0024.5 | ||||||
| mv_B0024.8 | ||||||
| sjj_B0024.5 | ||||||
| sjj_B0024.8 | ||||||
| Corresponding_oligo_set (16) | ||||||
| Matching_cDNA (19) | ||||||
| RNAi_result | WBRNAi00009552 | |||||
| WBRNAi00009554 | ||||||
| WBRNAi00027946 | ||||||
| WBRNAi00038655 | ||||||
| WBRNAi00038656 | ||||||
| Microarray_results (18) | ||||||
| Brief_identification | Crescerin-like protein che-12 | Accession_evidence | UniProt | SP:Q17423 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 27 Feb 2013 00:00:00 | WBPerson4025 | ||||
| Remark | [080724 pad] Gene prediction modified following a genome sequence update in this clone. Extended exon 10 into the large open reading frame created by the update. | Paper_evidence | WBPaper00031483 | |||
| Accession_evidence | NDB | CB397350 | ||||
| Curator_confirmed | WBPerson1983 | |||||
| [000608 ag3] Fusion of B0024.8 and B0024.5 based on EST yk554d7 | Accession_evidence | NDB | AV202757 | |||
| AV199965 | ||||||
| [071210 gw3] Took a look at this gene model. Althoughit does appear at first that the OST OSTR187B3_1 indicates that the first half of this gene should be split off into a separate gene, the current structure is shown to be correct by the large number of good Blast hits to a wide range of species including mammals which have similar proteins matching the whole of this gene's protein product. | Curator_confirmed | WBPerson4025 | ||||
| Method | curated |
