WormBase Tree Display for Variation: WBVar02156411
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| WBVar02156411 | Name | Public_name | gk5560 | ||
|---|---|---|---|---|---|
| HGVSg | CHROMOSOME_III:g.11718910_11719621del | ||||
| Sequence_details | SMap | S_parent | Sequence | Y41C4A | |
| Flanking_sequences | AAATACATAAATTAAGCACAAAAAAGACCA | TGCGCGCGCATTCAAATTTAGATTTCCCCG | |||
| Mapping_target | CHROMOSOME_III | ||||
| Type_of_mutation | Deletion | ||||
| SeqStatus | Pending_curation | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00051184 | ||||
| Laboratory | VC | ||||
| Person | WBPerson427 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00001235 | |||
| Transcript | Y41C4A.10.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,3_prime_UTR_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-445 | ||||
| Intron_number | 2-3/4 | ||||
| Exon_number | 1-5/5 | ||||
| Isolation | Mutagen | CRISPR_Cas9 | |||
| Remark | Variation accession generated for Mark Edgley for a set of gk CRISPR alleles. | ||||
| Deletion_verification Flanking sequences and deletion extents inferred from design of CRISPR deletion/selection cassette insertion HDR event. QC-PCR assays indicate that the event is perfect, but it was not sequenced. | |||||
| Method | Allele |
