WormBase Tree Display for Variation: WBVar02153632

WBVar02153632 Name: Public_name: gk5148
    Other_name: F59C12.1a.1:c.271-85_1786del
      F59C12.1b.1:c.271-85_*33del
    HGVSg: CHROMOSOME_X:g.16597412_16601826del
  Sequence_details: SMap: S_parent: Sequence: F59C12
    Flanking_sequences: TGACTTGTTACATTGAATTCTGAAGGTAGT CACCGGGTCCCAAAAGATCACAAGGTGCCC
    Mapping_target: CHROMOSOME_X
    Type_of_mutation: Deletion
    SeqStatus: Pending_curation
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00037905
    Laboratory: VC
    Person: WBPerson427
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00000401
    Transcript: F59C12.1a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F59C12.1a.1:c.271-85_1786del
        cDNA_position: ?-1788
        CDS_position: ?-1786
        Protein_position: ?-596
        Intron_number: 3-14/15
        Exon_number: 4-15/16
      F59C12.1b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F59C12.1b.1:c.271-85_*33del
        cDNA_position: ?-1800
        Intron_number: 3-14/15
        Exon_number: 4-16/16
  Isolation: Mutagen: CRISPR_Cas9
  Genetics: Interpolated_map_position: X 24.056
  Remark: Batch created from Strain genotype data Curator_confirmed: WBPerson1983
    Deletion_verification Flanking sequences and deletion extents inferred from design of CRISPR deletion/selection cassette insertion HDR event. QC-PCR assays indicate that the event is imperfect, but it was not sequenced.
  Method: Deletion_allele