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WormBase Tree Display for Variation: WBVar02152008

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Name Class

WBVar02152008NamePublic_nametm11687
Other_nameF35D11.2a.3:c.-19+1337_-18-5052del
F35D11.2b.1:c.6+1546_7-5052del
F35D11.2a.2:c.-19+1546_-18-5052del
HGVSgCHROMOSOME_II:g.4614612_4618773del
Sequence_detailsSMapS_parentSequenceF35D11
Flanking_sequencesaccatttgaaaaacatgagaataagtgcatctttagctatcaaaaaatacttattatgaa
Mapping_targetF35D11
Source_location7CHROMOSOME_II46146114618774Inferred_automaticallyNational_Bioresource_Project
Type_of_mutationDeletion
PCR_producttm11687_external
tm11687_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
LaboratoryFX
AuthorMitani S
DB_infoDatabaseNational_Bioresource_Projectseq11687
NBP_allele
StatusLive
AffectsGeneWBGene00004122
WBGene00018048
WBGene00018047
TranscriptF35D11.7.1VEP_consequencetranscript_ablation
VEP_impactHIGH
Intron_number2-4/5
Exon_number1-6/6
F35D11.8.1VEP_consequencetranscript_ablation
VEP_impactHIGH
Intron_number1-3/4
Exon_number1-5/5
F35D11.2a.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF35D11.2a.2:c.-19+1546_-18-5052del
Intron_number1/8
F35D11.2b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF35D11.2b.1:c.6+1546_7-5052del
Intron_number1/6
F35D11.2a.3VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScF35D11.2a.3:c.-19+1337_-18-5052del
Intron_number1/8
IsolationMutagenTMP/UV
GeneticsMapII
Remark21656/21657-25818/25819 (4162 bp deletion)
This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use.Paper_evidenceWBPaper00041807
MethodNBP_knockout_allele