WormBase Tree Display for Variation: WBVar02151892

WBVar02151892 Name: Public_name: tm11567
    HGVSg: CHROMOSOME_IV:g.10529755_10535181del
  Sequence_details: SMap: S_parent: Sequence: T07G12
    Flanking_sequences: tggaaaaattgattttggagaattttgtaa ttagaccatttgcatctgtcagtgaaactc
    Mapping_target: T07G12
    Source_location: 7 CHROMOSOME_IV 10529754 10535182 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm11567_external
      tm11567_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 11567
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00011593
      WBGene00166330
      WBGene00000288
      WBGene00011594
    Transcript: T07G12.1a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 909-?
        CDS_position: 411-?
        Protein_position: 137-?
        Intron_number: 4-5/6
        Exon_number: 4-7/7
      T07G12.1b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 523-?
        CDS_position: 327-?
        Protein_position: 109-?
        Intron_number: 5-6/7
        Exon_number: 5-8/8
      T07G12.2.1 VEP_consequence: transcript_ablation
        VEP_impact: HIGH
        Intron_number: 2-7/8
        Exon_number: 1-9/9
      T07G12.16
      T07G12.3.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-891
        CDS_position: ?-868
        Protein_position: ?-290
        Intron_number: 2-5/11
        Exon_number: 1-6/12
      T07G12.1b.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 458-?
        CDS_position: 327-?
        Protein_position: 109-?
        Intron_number: 4-5/6
        Exon_number: 4-7/7
      T07G12.1c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: 249-?
        CDS_position: 249-?
        Protein_position: 83-?
        Intron_number: 1-2/2
        Exon_number: 1-3/3
  Isolation: Mutagen: TMP/UV
  Genetics: Map: IV
  Remark: 1322/1323-6749/6750 (5427 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele