WormBase Tree Display for Variation: WBVar02150778

WBVar02150778 Name: Public_name: tm3545
    Other_name: CE01431:p.Arg175LeufsTer55
      ZC155.1.1:c.524_630del
    HGVSg: CHROMOSOME_III:g.5226200_5226306del
  Sequence_details: SMap: S_parent: Sequence: ZC155
    Flanking_sequences: tattcattttcttattttaggatgctgttc ttccaggaactcgctggtggctctatcgag
    Mapping_target: ZC155
    Source_location: 7 CHROMOSOME_III 5226199 5226307 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm3545_external
      tm3545_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 3545
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00003588
    Transcript: ZC155.1.1 VEP_consequence: frameshift_variant
        VEP_impact: HIGH
        HGVSc: ZC155.1.1:c.524_630del
        HGVSp: CE01431:p.Arg175LeufsTer55
        cDNA_position: 527-633
        CDS_position: 524-630
        Protein_position: 175-210
        Exon_number: 3/4
        Codon_change: cGCCTGTTCGCCGACGGAAAAGCCAAGCTTGCCAAGAAGGACGGAACACACTTCCTTCACATCCTCGCCACTCAAAATCAATACCAGCTCCGCAAGGTCTTCGCCTAC/c
        Amino_acid_change: RLFADGKAKLAKKDGTHFLHILATQNQYQLRKVFAY/X
  Isolation: Mutagen: TMP/UV
  Genetics: Map: III
  Remark: 27829/27830-27936/27937 (108 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele