WormBase Tree Display for Variation: WBVar02146904

WBVar02146904 Name: Public_name: tm5974
    Other_name: C56A3.7a.1:c.672+155_*112del
    HGVSg: CHROMOSOME_V:g.13559027_13559913del
  Sequence_details: SMap: S_parent: Sequence: C56A3
    Flanking_sequences: aatttccagttgaattgttgaaaaaaattg gatagcatcaaacgctgtacagtcttatat
    Mapping_target: C56A3
    Source_location: 7 CHROMOSOME_V 13559026 13559914 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm5974_external
      tm5974_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 5974
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00000302
    Transcript: C56A3.7a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: C56A3.7a.1:c.672+155_*112del
        cDNA_position: ?-1224
        Intron_number: 8-10/11
        Exon_number: 9-12/12
      C56A3.7d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 5-7/7
        Exon_number: 6-8/8
      C56A3.7b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 6-8/8
        Exon_number: 7-9/9
      C56A3.7c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1-3/3
        Exon_number: 2-4/4
  Isolation: Mutagen: TMP/UV
  Genetics: Map: V
  Remark: 32692/32693-33579/33580 (887 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele