WormBase Tree Display for Variation: WBVar02145216

WBVar02145216 Name: Public_name: tm8047
    Other_name: F31B12.1k.1:c.1957+28_2061del
      F31B12.1d.1:c.1957+28_2061del
      F31B12.1l.1:c.1786+28_1890del
      F31B12.1i.1:c.1957+28_2061del
      F31B12.1g.1:c.1786+28_1890del
      F31B12.1j.1:c.1786+28_1890del
      F31B12.1h.1:c.1786+28_1890del
    HGVSg: CHROMOSOME_X:g.10824588_10824735del
  Sequence_details: SMap: S_parent: Sequence: F31B12
    Flanking_sequences: tagcaataatctggccaccaatatctgtgt ttgcaagcaagcaaacaacacacaaaccct
    Mapping_target: F31B12
    Source_location: 7 CHROMOSOME_X 10824587 10824736 Inferred_automatically: National_Bioresource_Project
    Type_of_mutation: Deletion
    PCR_product: tm8047_external
      tm8047_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Laboratory: FX
    Author: Mitani S
    DB_info: Database: National_Bioresource_Project seq 8047
    NBP_allele
    Status: Live
  Affects: Gene: WBGene00004036
    Transcript: F31B12.1j.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F31B12.1j.1:c.1786+28_1890del
        cDNA_position: ?-1890
        CDS_position: ?-1890
        Protein_position: ?-630
        Intron_number: 17/63
        Exon_number: 18/64
      F31B12.1g.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F31B12.1g.1:c.1786+28_1890del
        cDNA_position: ?-1890
        CDS_position: ?-1890
        Protein_position: ?-630
        Intron_number: 17/63
        Exon_number: 18/64
      F31B12.1d.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F31B12.1d.1:c.1957+28_2061del
        cDNA_position: ?-2061
        CDS_position: ?-2061
        Protein_position: ?-687
        Intron_number: 18/64
        Exon_number: 19/65
      F31B12.1h.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F31B12.1h.1:c.1786+28_1890del
        cDNA_position: ?-1890
        CDS_position: ?-1890
        Protein_position: ?-630
        Intron_number: 17/63
        Exon_number: 18/64
      F31B12.1l.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F31B12.1l.1:c.1786+28_1890del
        cDNA_position: ?-1890
        CDS_position: ?-1890
        Protein_position: ?-630
        Intron_number: 17/63
        Exon_number: 18/64
      F31B12.1i.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F31B12.1i.1:c.1957+28_2061del
        cDNA_position: ?-2061
        CDS_position: ?-2061
        Protein_position: ?-687
        Intron_number: 18/64
        Exon_number: 19/65
      F31B12.1k.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F31B12.1k.1:c.1957+28_2061del
        cDNA_position: ?-2061
        CDS_position: ?-2061
        Protein_position: ?-687
        Intron_number: 18/64
        Exon_number: 19/65
  Isolation: Mutagen: TMP/UV
  Genetics: Map: X
  Description: Phenotype_not_observed: WBPhenotype:0000062 Person_evidence: WBPerson7743
        Curator_confirmed: WBPerson712
        Remark: Classified as homozygous viable by the National BioResource Project of Japan. Person_evidence: WBPerson7743
            Curator_confirmed: WBPerson712
  Remark: 28086/28087-28234/28235 (148 bp deletion)
    This knockout was generated by the National Bioresource Project, Tokyo, Japan, which is part of the International C. elegans Gene Knockout Consortium, which should be acknowledged in any publications resulting from its use. Paper_evidence: WBPaper00041807
  Method: NBP_knockout_allele