WormBase Tree Display for Variation: WBVar02140700
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| WBVar02140700 | Evidence | Paper_evidence | WBPaper00045317 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | h14068 | ||||
| Other_name | CE47951:p.Ala71= | |||||
| F39D8.3b.1:c.213C>T | ||||||
| F39D8.3a.2:c.90C>T | ||||||
| CE34014:p.Ala30= | ||||||
| F39D8.3a.1:c.90C>T | ||||||
| HGVSg | CHROMOSOME_X:g.15422614C>T | |||||
| Sequence_details | SMap | S_parent | Sequence | F39D8 | ||
| Flanking_sequences | AACACTCTCGCCAAAAACGATCGGTGTCTCCAATTTCCGC | TCGTTGCCTAATCGGTGATCCAATGTTCCGAGTTGCATCC | ||||
| Mapping_target | CHROMOSOME_X | |||||
| Source_location | 200 | CHROMOSOME_X | 15422535 | 15422535 | ||
| Type_of_mutation | Substitution | C | T | |||
| SeqStatus | Sequenced | |||||
| Variation_type | Allele | |||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00023886 | |||||
| Laboratory | KR | |||||
| Analysis | WGS_Rose | |||||
| Status | Live | |||||
| Affects | Gene | WBGene00009561 | ||||
| Transcript | F39D8.3a.2 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | |||||
| HGVSc | F39D8.3a.2:c.90C>T | |||||
| HGVSp | CE34014:p.Ala30= | |||||
| cDNA_position | 121 | |||||
| CDS_position | 90 | |||||
| Protein_position | 30 | |||||
| Exon_number | 2/10 | |||||
| Codon_change | gcC/gcT | |||||
| Amino_acid_change | A | |||||
| F39D8.3a.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | F39D8.3a.1:c.90C>T | |||||
| HGVSp | CE34014:p.Ala30= | |||||
| cDNA_position | 313 | |||||
| CDS_position | 90 | |||||
| Protein_position | 30 | |||||
| Exon_number | 3/11 | |||||
| Codon_change | gcC/gcT | |||||
| Amino_acid_change | A | |||||
| F39D8.3b.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | F39D8.3b.1:c.213C>T | |||||
| HGVSp | CE47951:p.Ala71= | |||||
| cDNA_position | 213 | |||||
| CDS_position | 213 | |||||
| Protein_position | 71 | |||||
| Exon_number | 2/9 | |||||
| Codon_change | gcC/gcT | |||||
| Amino_acid_change | A | |||||
| Reference | WBPaper00040589 | |||||
| WBPaper00000975 | ||||||
| WBPaper00003985 | ||||||
| WBPaper00000699 | ||||||
| WBPaper00045317 | ||||||
| Method | WGS_Rose |
